ClassCastException in SBMLReader

Open danv61 opened this issue 1 year ago • 1 comments

The attached xml file triggers the following exception:

java.lang.ClassCastException: class org.sbml.jsbml.xml.XMLNode cannot be cast to class org.sbml.jsbml.Annotation (org.sbml.jsbml.xml.XMLNode and org.sbml.jsbml.Annotation are in unnamed module of loader 'app')

at org.sbml.jsbml.xml.stax.SBMLReader.readXMLFromXMLEventReader(SBMLReader.java:851)

The following warning was also generated: WARN (SBMLReader.java:735) - Starting to read a new annotation element while the previous annotation element is not finished.

Here is the code line in question: annoReader.processAnnotation((SBase) ((Annotation) lastElement).getParent()); // or take the second element in the stack ??

I checked the file with the online SBML validator and it is valid. Ota2015_GDI-integrated.zip

Oct 29 '24 16:10 danv61

Hi! I just looked into the file and it seems to be the same issue as the related #264

Unfortunately without deeper understanding of your use case it is pretty hard to say what the correct course of action for you would be here.

Dec 11 '24 13:12 Schmoho