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DO NOT FORK! This repository is outdated. It is only kept as a reference for old forks. Create a clean clone from https://github.com/biojava/biojava

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Reverting userData from <String, String> to <String, Object> as originally intended

golharam avatar golharam

Added Indexes on FeatureList

This patch modifies the GFF-related classes. Added a new method to the class GFF3Reader: public static FeatureList read(String filename, List indexes) this method will create an index for each attribute...

CarmeloFoti avatar CarmeloFoti

cannot read FASTA with small caps letters

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One output option at PFAM is usage of small caps to indicate non-conserved residues in multiple seq alignments. Trying to read such a file using BioJava results in an exception....

rwst avatar rwst

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