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Error messages in the Introduction to RBi vignette

Open chrisprashad opened this issue 4 years ago • 2 comments

Context:

In the RBi package vignette, under Generating a dataset, there is the following error message:

## Error in run.libbi(x, client = "sample", ...): LibBi terminated with "Error: ./configure failed with return code 77. See /var/folders/k_/8wrb49vn4713j7fn6y3hmndm0000gn/T/Rtmpjgq4OD/SIR1336d7948851c/.SIR/build_assert_openmp_sm_30/configure.log and /var/folders/k_/8wrb49vn4713j7fn6y3hmndm0000gn/T/Rtmpjgq4OD/SIR1336d7948851c/.SIR/build_assert_openmp_sm_30/config.log for details".
## You can view a full log using "print_log('/private/var/folders/k_/8wrb49vn4713j7fn6y3hmndm0000gn/T/Rtmpjgq4OD/SIR1336d7948851c/output1336d81b2f79.txt')"

All subsequent commands also yield errors as a result and no useful output is generated.

I would appreciate if you could assist with resolving this issue.

chrisprashad avatar Feb 08 '22 03:02 chrisprashad

Can you run the print_log command that's suggested and post the output?

sbfnk avatar Feb 08 '22 21:02 sbfnk

Here is what I get when I run the print_log command:

> print_log('/private/var/folders/ys/5jtmxty12_92qlj7wfdjx66w0000gn/T/RtmpOZIJr5/SIR82d347276729/output82d36be5d93d.txt')
/opt/homebrew/bin/libbi sample --build-dir /var/folders/ys/5jtmxty12_92qlj7wfdjx66w0000gn/T//RtmpOZIJr5/SIR82d347276729 --end-time 112 --noutputs 16 --target joint --nsamples 1 --seed 1245210231 --output-file /private/var/folders/ys/5jtmxty12_92qlj7wfdjx66w0000gn/T/RtmpOZIJr5/SIR82d347276729/SIR_output82d33f196b22.nc --model-file /private/var/folders/ys/5jtmxty12_92qlj7wfdjx66w0000gn/T/RtmpOZIJr5/SIR82d347276729/SIR.bi 
Error: ./autogen.sh failed with return code 127. Make sure autoconf and automake are installed. See /var/folders/ys/5jtmxty12_92qlj7wfdjx66w0000gn/T/RtmpOZIJr5/SIR82d347276729/.SIR/build_assert_openmp_sm_30/autogen.log for details 

chrisprashad avatar Feb 10 '22 02:02 chrisprashad

Closing as stale. @chrisprashad please reopen if you still have this issue.

sbfnk avatar Apr 24 '23 11:04 sbfnk