sashulkaSh

Symbolic alleles not supported when using consensus _2

2

Hello! Im using bcftools 1.15.1 : `bcftool consensus -H 1 -f ref.fa hifi_on_primary_phased.vcf.gz > hap1.fasta` error: ``` Symbolic alleles other than , or are currently not supported, e.g. "" at...

gfa unitig vs gfa contig

1

Hello! I see, that two nodes in unitigs graph (gfa) are not linked by an edge. At the same time this nodes are merged togehter in the primary assembly...Why there...

Hello! I run command: ``` portcullis full -t ${t} \ --bam_filter \ --orientation FR \ --strandedness unstranded \ -o ./portcullis2 \ ${g} \ ${bam}/* ``` I have two files that...