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Wrong 'perturbation' tag of data

Open siduanmiao opened this issue 3 years ago • 0 comments

Hello, In the data of your GSM2396860_K562_TFs__High_MOI data of DixitRegev2016.h5ad, you give the cell barocde which is not included in cbc_gbc_dict a tag "control" in the adata.obs['perturbation'], but the true control groups is cells knocked by 'INTERGENIC216151','INTERGENIC1144056','INTERGENIC393453' and 'INTERGENIC1216445'. This will influence the downsteam work if the 'control' tag is given to these cells without sgRNA knocking. May the 'None' tag is better than 'control'? This is such an excellent works.

siduanmiao avatar Nov 25 '22 13:11 siduanmiao