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Added features for `Percent_Expressing`

Open samuel-marsh opened this issue 4 years ago • 2 comments

  • [ ] Support for setting individual expression thresholds for each feature supplied
  • [ ] Support for quantifying cells expressing two or more features simultaneously

samuel-marsh avatar Oct 06 '21 10:10 samuel-marsh

Hi @samuel-marsh - This is quite a useful helper function. I was wondering if you could elaborate on how the function determine if a cell is considered positive here? Is it just if it has normalised expression > 0? Thank you!

Update: threshold: Expression threshold to use for calculation of percent expressing (default is 0).

denvercal1234GitHub avatar Aug 06 '24 18:08 denvercal1234GitHub

@denvercal1234GitHub yes with default settings that is correct. This can be modified by altering the threshold parameter or the layer used for calculation. https://samuel-marsh.github.io/scCustomize/reference/Percent_Expressing.html

Best, Sam

samuel-marsh avatar Aug 06 '24 20:08 samuel-marsh