scCustomize
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Added features for `Percent_Expressing`
- [ ] Support for setting individual expression thresholds for each feature supplied
- [ ] Support for quantifying cells expressing two or more features simultaneously
Hi @samuel-marsh - This is quite a useful helper function. I was wondering if you could elaborate on how the function determine if a cell is considered positive here? Is it just if it has normalised expression > 0? Thank you!
Update: threshold: Expression threshold to use for calculation of percent expressing (default is 0).
@denvercal1234GitHub yes with default settings that is correct. This can be modified by altering the threshold parameter or the layer used for calculation. https://samuel-marsh.github.io/scCustomize/reference/Percent_Expressing.html
Best, Sam