giggle
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ryanlayer
Interval data structure
It appears that something is wrong with compiling steps of giggle, many `/usr/bin/ld: ../obj/leaf.o:(.bss+0xe0): multiple definition of 'cache'; /tmp/ccMqGR06.o:(.bss+0x2c0): first defined here` type errors. Output of `make` in src: [before.log](https://github.com/ryanlayer/giggle/files/9618791/before.log)...
To who it may concerned, When I was trying to build the index using the cistrome histone modification peak files, giggle report this errors,which says "could not open XXX." ```shell...
Hi - When I try to index multiple VCF files data/*.gz, it only takes the first VCF file for indexing and not all in the directory. Can it only take...
noticed on line 288 that leaf_data_cache_handler is re declared (previously declared on line 281). I can't imagine that that was done on purpose.
bpt.c line 337; append is used as a variable and a function. The define in bpt.h is a function header but the function is not defined. // If the append...
When searching with a bed file containing a negative start position I get a segfault.
Hi Ryan, I am trying to index ~3,500 bed files using giggle. They all have been sorted using `giggle/scripts/sort_bed "tmp/*.bed" bgzip_sort 4`. But typing `giggle index -i "bgzip_sort/*.gz" -o giggle_index`...
Hi @ryanlayer, I'm interested in writing a bioconda recipe for giggle. Would you be up for helping me with this? Best, Mike
Hi, I'm trying to run the interactive heatmap. The page is loading, I can choose the default genomic region or upload a bed file, but when I hit the "run"...
Everything worked as expected until I had more than 1 million lines in my query file for "**giggle search**". Then it crashed with **Segmentation Fault**. After trying to do some...
