spoa
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rvaser
SIMD partial order alignment tool/library
Curious as I am looking for a long read mapper that does global over local. many thanks, Rick
When install spoa, I get the following errors while run 'make'. I tried to install previous release package and it reported the same errors. And I really do not known...
spoa-4.0.7 fails to find cereal rev. 64f50dbd: ``` ===> Building for spoa-4.0.7_1 [1/3] : && /usr/bin/c++ -fPIC -O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fno-omit-frame-pointer -isystem /usr/local/include -Wall -Wextra -pedantic...
Hi, spoa is a fantastic tool, but the memory usage is a bit high. Is there any way to adjust the parameters to make it smaller?
Spoa segment faults if it runs out of memory. Instead, it should throw an exception or return an error code. The attached test program segment faulted on my 32 GB...
Is there a way to generate multiple consensus paths and not just only the best/heaviest path?
Hi @rvaser Meson is a new build system that aims to improve a lot on the imperfections of CMake, like a nicer syntax, being non-turing complete, being faster and allowing...
Hello, Thank you very much for your great tool! I used SPOA as part of my tool (by including spoa.hpp as described in Github and compiling from source). I am...
Our HPC uses zlib 1.2.7, but spoa requires 1.2.8, and due to the above cmake policy it is not straightforward to use another ZLIB in place (no root access, upgrading...
