Fast5-to-Fastq
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rrwick
A simple tool for extracting reads from Oxford Nanopore fast5 files
Trying to convert via: `./Fast5-to-Fastq/fast5_to_fastq.py /Users/ben/Downloads/fast5/FAN04901_90bfe2e3_0.fast5 > /Users/ben/Downloads/output.fastq` Source file from here: https://public-docs.crg.es/covid/8F6N9_Korea_VeroInfected.Wuhan_Hu_1/NanoPreprocess/fast5_files/ Output is: ``` Looking for fast5 files in: /Users/ben/Downloads/fast5/FAN04901_90bfe2e3_0.fast5 Found 0 reads ``` Any ideas/pointers? Thanks!
Hi, I've got some fast5 files that I'm trying to decode. For context, minknow can't find guppy so basecalling (both real-time and not) doesn't work yet and there is no...
