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fatal error: cholmod.h: No such file or directory compilation terminated.

Open themmes opened this issue 8 years ago • 11 comments

Dear Alfonso,

Currently I am trying to get your code to run. However stumbled upon a few difficulties.

The dependencies I needed so far are many more then you described, probably PCL dependencies?

Well I came as far as (sort of) successfully running cmake ... But when making I got this fatal error in Eigen, one of the few dependencies I was actually sure of I installed it correctly.

Scanning dependencies of target pclbo
[ 33%] Building CXX object CMakeFiles/pclbo.dir/src/meshlbo.cpp.o
[ 66%] Building CXX object CMakeFiles/pclbo.dir/src/meshgeoheat.cpp.o
In file included from /home/tom/vision/PCLBO/include/pclbo/geodesics/meshgeoheat.h:7:0,
                 from /home/tom/vision/PCLBO/src/meshgeoheat.cpp:1:
/usr/include/eigen3/Eigen/CholmodSupport:16:23: fatal error: cholmod.h: No such file or directory
compilation terminated.
CMakeFiles/pclbo.dir/build.make:86: recipe for target 'CMakeFiles/pclbo.dir/src/meshgeoheat.cpp.o' failed
make[2]: *** [CMakeFiles/pclbo.dir/src/meshgeoheat.cpp.o] Error 1
CMakeFiles/Makefile2:67: recipe for target 'CMakeFiles/pclbo.dir/all' failed
make[1]: *** [CMakeFiles/pclbo.dir/all] Error 2
Makefile:127: recipe for target 'all' failed
make: *** [all] Error 2

Any chance you could help me out here? Thanks in advance, looking forward to run your Heat diffusion demo on some more objects!

themmes avatar Apr 20 '17 17:04 themmes

two years later- Have you managed to do so? Thanks

dvirginz avatar Apr 30 '19 14:04 dvirginz

Hi, sorry for the delay :( I just built the project and got the same issue. It seems that libsuitesparse was missing. In my case I just had to apt-get install libsuitesparse-dev and I could build it again :)

rosds avatar May 01 '19 00:05 rosds

and after all that, have you been able to run the examples? I mean, after cmake ..;make I don't have the ./visualize_eigenfunctions demo folder

BTW, deeply appreciate your communication on a 4 years old project. Finding geodesic distance code for point clouds is a rare find:/

dvirginz avatar May 01 '19 08:05 dvirginz

just refactored a little bit the CMakeLists.txt file. It should check for SuiteSparse now and the visualize_eigenfunctions should be buildable. It is pretty slow though :(

rosds avatar May 01 '19 16:05 rosds

Can you confirm you are still using Point Cloud Library (>= 1.7) Eigen library 3.0 CGAL 3.9

and now also suitesparse 5.4.0?

Tried installing from a fresh docker and still no luck. Again, your help is much appreciated:)

dvirginz avatar May 01 '19 21:05 dvirginz

I am currently working on ubuntu 18.04 LTS with: eigen: 3.3.4-4 pcl: 1.8.1 cgal: 4.11 suitesparse: 1:5.1.2-2

rosds avatar May 01 '19 21:05 rosds

Unfortunally I haven't manage to build the proper environment.

Starting from a clean ubuntu docker:

clean ubuntu
docker pull ubuntu:xenial

#esse:
apt-get update && apt-get install -y \
    build-essential \
    git \
    liblapack-dev \
    libopenblas-dev \
    openmpi-bin \
    libopenmpi-dev \
    && apt-get clean

apt-get install -y software-properties-common








#for suitesparse:
 apt-get update -q && \
    apt-get install -y --fix-missing --no-install-recommends \
    g++ cmake mc wget liblapack-dev liblapack3 libopenblas-base libopenblas-dev

#and then 
wget http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-5.1.2.tar.gz
tar xf SuiteSparse-5.1.2.tar.gz 
make
make install




#pointcloudlibrary

apt-get update && apt-get install -y \
git build-essential linux-libc-dev \
cmake cmake-gui \
libusb-1.0-0-dev libusb-dev libudev-dev \
mpi-default-dev openmpi-bin openmpi-common \
libflann-dev \
libeigen3-dev \
libboost-all-dev \
libvtk6-dev \
libqhull* libgtest-dev \
freeglut3-dev pkg-config \
libxmu-dev libxi-dev \
qt5-default openjdk-8-jdk openjdk-8-jre \
openssh-client

cd /opt \
   && git clone https://github.com/PointCloudLibrary/pcl.git pcl-trunk \
   && ln -s /opt/pcl-trunk /opt/pcl \
   && cd /opt/pcl && git checkout pcl-1.8.0 \
   && mkdir -p /opt/pcl-trunk/release \
   && cd /opt/pcl/release && cmake -DCMAKE_BUILD_TYPE=None -DBUILD_GPU=ON -DBUILD_apps=ON -DBUILD_examples=ON .. \
   && cd /opt/pcl/release && make -j3 \
   && cd /opt/pcl/release && make install \
   && cd /opt/pcl/release && make clean




#cgal

apt-get update \
&& apt-get install -y --no-install-recommends \
binutils \
ca-certificates \
cmake \
g++ \
gcc \
git \
lzip \
m4 \
make \
wget \
&& rm -rf /var/lib/apt/lists/*


mkdir /app
cd /app

export INSTALL_PREFIX=/usr/local

mkdir -p $INSTALL_PREFIX

# Build of GMP library
wget https://gmplib.org/download/gmp/gmp-6.1.2.tar.lz
tar xf gmp-6.1.2.tar.lz
cd gmp-6.1.2; ./configure --prefix=$INSTALL_PREFIX ; make install

wget http://www.mpfr.org/mpfr-current/mpfr-4.0.2.tar.gz
tar xf mpfr-4.0.2.tar.gz
cd mpfr-4.0.2; ./configure --with-gmp=$INSTALL_PREFIX --prefix=$INSTALL_PREFIX ; make install


git clone https://github.com/CGAL/cgal.git
mkdir buildCGAL
cd buildCGAL; cmake \
    -DGMP_INCLUDE_DIR=$INSTALL_PREFIX/include \
    -DGMP_LIBRARIES=$INSTALL_PREFIX/lib \
    -DMPFR_INCLUDE_DIR=$INSTALL_PREFIX/include \
    -DMPFR_LIBRARIES=$INSTALL_PREFIX/lib \
    -DBOOST_INCLUDEDIR=$INSTALL_PREFIX/include \
    -DCMAKE_INSTALL_PREFIX=$INSTALL_PREFIX \
    ../cgal
cd buildCGAL; make install


#PCLBO
git clone https://github.com/alfonsoros88/PCLBO.git
mkdir build
    cd build
    cmake ..

with the errors

root@a7d019c57b5f:/app/PCLBO/build# cmake ..
-- The CXX compiler identification is GNU 7.4.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Checking for module 'eigen3'
--   Found eigen3, version 3.3.4
-- Found eigen: /usr/include/eigen3  
-- Looking for C++ include pthread.h
-- Looking for C++ include pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Boost version: 1.65.1
-- Found the following Boost libraries:
--   system
--   filesystem
--   thread
--   date_time
--   iostreams
--   serialization
--   chrono
--   atomic
--   regex
-- Checking for module 'libopenni'
--   No package 'libopenni' found
-- Could NOT find openni (missing: OPENNI_LIBRARY OPENNI_INCLUDE_DIRS) 
** WARNING ** io features related to openni will be disabled
-- Checking for module 'libopenni2'
--   No package 'libopenni2' found
-- Could NOT find OpenNI2 (missing: OPENNI2_LIBRARY OPENNI2_INCLUDE_DIRS) 
** WARNING ** io features related to openni2 will be disabled
-- Could NOT find ensenso (missing: ENSENSO_LIBRARY ENSENSO_INCLUDE_DIR) 
** WARNING ** io features related to ensenso will be disabled
-- Could NOT find DAVIDSDK (missing: DAVIDSDK_LIBRARY DAVIDSDK_INCLUDE_DIR) 
** WARNING ** io features related to davidSDK will be disabled
-- Could NOT find DSSDK (missing: _DSSDK_LIBRARIES) 
** WARNING ** io features related to dssdk will be disabled
** WARNING ** io features related to pcap will be disabled
** WARNING ** io features related to png will be disabled
-- The imported target "vtkRenderingPythonTkWidgets" references the file
   "/usr/lib/x86_64-linux-gnu/libvtkRenderingPythonTkWidgets.so"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtk" references the file
   "/usr/bin/vtk"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake"
but not all the files it references.

-- Found libusb-1.0: /usr/include  
** WARNING ** io features related to libusb-1.0 will be disabled
-- Checking for module 'flann'
--   Found flann, version 1.9.1
-- Found Flann: /usr/lib/x86_64-linux-gnu/libflann_cpp_s.a  
-- Checking for module 'libopenni'
--   No package 'libopenni' found
-- Could NOT find openni (missing: OPENNI_LIBRARY OPENNI_INCLUDE_DIRS) 
** WARNING ** visualization features related to openni will be disabled
-- Checking for module 'libopenni2'
--   No package 'libopenni2' found
-- Could NOT find OpenNI2 (missing: OPENNI2_LIBRARY OPENNI2_INCLUDE_DIRS) 
** WARNING ** visualization features related to openni2 will be disabled
-- Could NOT find ensenso (missing: ENSENSO_LIBRARY ENSENSO_INCLUDE_DIR) 
** WARNING ** visualization features related to ensenso will be disabled
-- Could NOT find DAVIDSDK (missing: DAVIDSDK_LIBRARY DAVIDSDK_INCLUDE_DIR) 
** WARNING ** visualization features related to davidSDK will be disabled
-- Could NOT find DSSDK (missing: _DSSDK_LIBRARIES) 
** WARNING ** visualization features related to dssdk will be disabled
-- Could NOT find RSSDK (missing: _RSSDK_LIBRARIES) 
** WARNING ** visualization features related to rssdk will be disabled
-- Found qhull: /usr/lib/x86_64-linux-gnu/libqhull.so  
-- Checking for module 'libopenni'
--   No package 'libopenni' found
-- Could NOT find openni (missing: OPENNI_LIBRARY OPENNI_INCLUDE_DIRS) 
** WARNING ** apps features related to openni will be disabled
-- looking for PCL_COMMON
-- Found PCL_COMMON: /usr/local/lib/libpcl_common.so  
-- looking for PCL_OCTREE
-- Found PCL_OCTREE: /usr/local/lib/libpcl_octree.so  
-- looking for PCL_IO
-- Found PCL_IO: /usr/local/lib/libpcl_io.so  
-- looking for PCL_KDTREE
-- Found PCL_KDTREE: /usr/local/lib/libpcl_kdtree.so  
-- looking for PCL_SEARCH
-- Found PCL_SEARCH: /usr/local/lib/libpcl_search.so  
-- looking for PCL_SAMPLE_CONSENSUS
-- Found PCL_SAMPLE_CONSENSUS: /usr/local/lib/libpcl_sample_consensus.so  
-- looking for PCL_FILTERS
-- Found PCL_FILTERS: /usr/local/lib/libpcl_filters.so  
-- looking for PCL_2D
-- Found PCL_2D: /usr/local/include/pcl-1.8  
-- looking for PCL_GEOMETRY
-- Found PCL_GEOMETRY: /usr/local/include/pcl-1.8  
-- looking for PCL_FEATURES
-- Found PCL_FEATURES: /usr/local/lib/libpcl_features.so  
-- looking for PCL_ML
-- Found PCL_ML: /usr/local/lib/libpcl_ml.so  
-- looking for PCL_SEGMENTATION
-- Found PCL_SEGMENTATION: /usr/local/lib/libpcl_segmentation.so  
-- looking for PCL_VISUALIZATION
-- Found PCL_VISUALIZATION: /usr/local/lib/libpcl_visualization.so  
-- looking for PCL_SURFACE
-- Found PCL_SURFACE: /usr/local/lib/libpcl_surface.so  
-- looking for PCL_REGISTRATION
-- Found PCL_REGISTRATION: /usr/local/lib/libpcl_registration.so  
-- looking for PCL_KEYPOINTS
-- Found PCL_KEYPOINTS: /usr/local/lib/libpcl_keypoints.so  
-- looking for PCL_TRACKING
-- Found PCL_TRACKING: /usr/local/lib/libpcl_tracking.so  
-- looking for PCL_RECOGNITION
-- Found PCL_RECOGNITION: /usr/local/lib/libpcl_recognition.so  
-- looking for PCL_STEREO
-- Found PCL_STEREO: /usr/local/lib/libpcl_stereo.so  
-- looking for PCL_APPS
-- Found PCL_APPS: /usr/local/lib/libpcl_apps.so  
-- looking for PCL_OUTOFCORE
-- Found PCL_OUTOFCORE: /usr/local/lib/libpcl_outofcore.so  
-- looking for PCL_PEOPLE
-- Found PCL_PEOPLE: /usr/local/lib/libpcl_people.so  
-- Found PCL: /usr/lib/x86_64-linux-gnu/libboost_system.so;/usr/lib/x86_64-linux-gnu/libboost_filesystem.so;/usr/lib/x86_64-linux-gnu/libboost_thread.so;/usr/lib/x86_64-linux-gnu/libboost_date_time.so;/usr/lib/x86_64-linux-gnu/libboost_iostreams.so;/usr/lib/x86_64-linux-gnu/libboost_serialization.so;/usr/lib/x86_64-linux-gnu/libboost_chrono.so;/usr/lib/x86_64-linux-gnu/libboost_atomic.so;/usr/lib/x86_64-linux-gnu/libboost_regex.so;/usr/lib/x86_64-linux-gnu/libpthread.so;optimized;/usr/local/lib/libpcl_common.so;debug;/usr/local/lib/libpcl_common.so;optimized;/usr/local/lib/libpcl_octree.so;debug;/usr/local/lib/libpcl_octree.so;vtkChartsCore;vtkCommonColor;vtkCommonDataModel;vtkCommonMath;vtkCommonCore;vtksys;vtkCommonMisc;vtkCommonSystem;vtkCommonTransforms;vtkInfovisCore;vtkFiltersExtraction;vtkCommonExecutionModel;vtkFiltersCore;vtkFiltersGeneral;vtkCommonComputationalGeometry;vtkFiltersStatistics;vtkImagingFourier;vtkImagingCore;vtkalglib;vtkRenderingContext2D;vtkRenderingCore;vtkFiltersGeometry;vtkFiltersSources;vtkRenderingFreeType;/usr/lib/x86_64-linux-gnu/libfreetype.so;/usr/lib/x86_64-linux-gnu/libz.so;vtkftgl;vtkDICOMParser;vtkDomainsChemistry;vtkIOXML;vtkIOGeometry;vtkIOCore;vtkIOXMLParser;/usr/lib/x86_64-linux-gnu/libexpat.so;vtkFiltersAMR;vtkParallelCore;vtkIOLegacy;vtkFiltersFlowPaths;vtkFiltersGeneric;vtkFiltersHybrid;vtkImagingSources;vtkFiltersHyperTree;vtkFiltersImaging;vtkImagingGeneral;vtkFiltersModeling;vtkFiltersParallel;vtkFiltersParallelFlowPaths;vtkParallelMPI;vtkFiltersParallelGeometry;vtkFiltersParallelImaging;vtkFiltersParallelMPI;vtkFiltersParallelStatistics;vtkFiltersProgrammable;vtkFiltersPython;/usr/lib/x86_64-linux-gnu/libpython2.7.so;vtkWrappingPythonCore;vtkWrappingTools;vtkFiltersReebGraph;vtkFiltersSMP;vtkFiltersSelection;vtkFiltersTexture;vtkFiltersVerdict;verdict;vtkGeovisCore;vtkInfovisLayout;vtkImagingHybrid;vtkIOImage;vtkmetaio;/usr/lib/x86_64-linux-gnu/libjpeg.so;/usr/lib/x86_64-linux-gnu/libpng.so;/usr/lib/x86_64-linux-gnu/libtiff.so;vtkInfovisBoostGraphAlgorithms;vtkInteractionStyle;vtkInteractionWidgets;vtkRenderingAnnotation;vtkImagingColor;vtkRenderingVolume;vtkViewsCore;/usr/lib/x86_64-linux-gnu/libproj.so;vtkIOAMR;/usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so;vtkIOEnSight;vtkIOExodus;vtkexoIIc;/usr/lib/x86_64-linux-gnu/libnetcdf_c++.so;/usr/lib/x86_64-linux-gnu/libnetcdf.so;vtkIOExport;vtkRenderingGL2PS;vtkRenderingContextOpenGL;vtkRenderingOpenGL;/usr/lib/x86_64-linux-gnu/libgl2ps.so;vtkRenderingLabel;vtkIOFFMPEG;vtkIOMovie;/usr/lib/x86_64-linux-gnu/libtheoraenc.so;/usr/lib/x86_64-linux-gnu/libtheoradec.so;/usr/lib/x86_64-linux-gnu/libogg.so;vtkIOGDAL;vtkIOGeoJSON;vtkIOImport;vtkIOInfovis;/usr/lib/x86_64-linux-gnu/libxml2.so;vtkIOLSDyna;vtkIOMINC;vtkIOMPIImage;vtkIOMPIParallel;vtkIOParallel;vtkIONetCDF;/usr/lib/x86_64-linux-gnu/libjsoncpp.so;vtkIOMySQL;vtkIOSQL;sqlite3;vtkIOODBC;vtkIOPLY;vtkIOParallelExodus;vtkIOParallelLSDyna;vtkIOParallelNetCDF;vtkIOParallelXML;vtkIOPostgreSQL;vtkIOVPIC;VPIC;vtkIOVideo;vtkIOXdmf2;vtkxdmf2;vtkImagingMath;vtkImagingMorphological;vtkImagingStatistics;vtkImagingStencil;vtkInteractionImage;vtkLocalExample;vtkParallelMPI4Py;vtkPythonInterpreter;vtkRenderingExternal;vtkRenderingFreeTypeFontConfig;vtkRenderingImage;vtkRenderingLIC;vtkRenderingLOD;vtkRenderingMatplotlib;vtkRenderingParallel;vtkRenderingParallelLIC;vtkRenderingVolumeAMR;vtkRenderingVolumeOpenGL;vtkTestingGenericBridge;vtkTestingIOSQL;vtkTestingRendering;vtkViewsContext2D;vtkViewsGeovis;vtkViewsInfovis;vtkWrappingJava;optimized;/usr/local/lib/libpcl_io.so;debug;/usr/local/lib/libpcl_io.so;optimized;/usr/lib/x86_64-linux-gnu/libflann_cpp_s.a;debug;/usr/lib/x86_64-linux-gnu/libflann_cpp_s.a;optimized;/usr/local/lib/libpcl_kdtree.so;debug;/usr/local/lib/libpcl_kdtree.so;optimized;/usr/local/lib/libpcl_search.so;debug;/usr/local/lib/libpcl_search.so;optimized;/usr/local/lib/libpcl_sample_consensus.so;debug;/usr/local/lib/libpcl_sample_consensus.so;optimized;/usr/local/lib/libpcl_filters.so;debug;/usr/local/lib/libpcl_filters.so;optimized;/usr/local/lib/libpcl_features.so;debug;/usr/local/lib/libpcl_features.so;optimized;/usr/local/lib/libpcl_ml.so;debug;/usr/local/lib/libpcl_ml.so;optimized;/usr/local/lib/libpcl_segmentation.so;debug;/usr/local/lib/libpcl_segmentation.so;optimized;/usr/local/lib/libpcl_visualization.so;debug;/usr/local/lib/libpcl_visualization.so;optimized;/usr/lib/x86_64-linux-gnu/libqhull.so;debug;/usr/lib/x86_64-linux-gnu/libqhull.so;optimized;/usr/local/lib/libpcl_surface.so;debug;/usr/local/lib/libpcl_surface.so;optimized;/usr/local/lib/libpcl_registration.so;debug;/usr/local/lib/libpcl_registration.so;optimized;/usr/local/lib/libpcl_keypoints.so;debug;/usr/local/lib/libpcl_keypoints.so;optimized;/usr/local/lib/libpcl_tracking.so;debug;/usr/local/lib/libpcl_tracking.so;optimized;/usr/local/lib/libpcl_recognition.so;debug;/usr/local/lib/libpcl_recognition.so;optimized;/usr/local/lib/libpcl_stereo.so;debug;/usr/local/lib/libpcl_stereo.so;optimized;/usr/local/lib/libpcl_apps.so;debug;/usr/local/lib/libpcl_apps.so;optimized;/usr/local/lib/libpcl_outofcore.so;debug;/usr/local/lib/libpcl_outofcore.so;optimized;/usr/local/lib/libpcl_people.so;debug;/usr/local/lib/libpcl_people.so;/usr/lib/x86_64-linux-gnu/libboost_system.so;/usr/lib/x86_64-linux-gnu/libboost_filesystem.so;/usr/lib/x86_64-linux-gnu/libboost_thread.so;/usr/lib/x86_64-linux-gnu/libboost_date_time.so;/usr/lib/x86_64-linux-gnu/libboost_iostreams.so;/usr/lib/x86_64-linux-gnu/libboost_serialization.so;/usr/lib/x86_64-linux-gnu/libboost_chrono.so;/usr/lib/x86_64-linux-gnu/libboost_atomic.so;/usr/lib/x86_64-linux-gnu/libboost_regex.so;/usr/lib/x86_64-linux-gnu/libpthread.so;optimized;/usr/lib/x86_64-linux-gnu/libqhull.so;debug;/usr/lib/x86_64-linux-gnu/libqhull.so;optimized;/usr/lib/x86_64-linux-gnu/libflann_cpp_s.a;debug;/usr/lib/x86_64-linux-gnu/libflann_cpp_s.a;vtkChartsCore;vtkCommonColor;vtkCommonDataModel;vtkCommonMath;vtkCommonCore;vtksys;vtkCommonMisc;vtkCommonSystem;vtkCommonTransforms;vtkInfovisCore;vtkFiltersExtraction;vtkCommonExecutionModel;vtkFiltersCore;vtkFiltersGeneral;vtkCommonComputationalGeometry;vtkFiltersStatistics;vtkImagingFourier;vtkImagingCore;vtkalglib;vtkRenderingContext2D;vtkRenderingCore;vtkFiltersGeometry;vtkFiltersSources;vtkRenderingFreeType;/usr/lib/x86_64-linux-gnu/libfreetype.so;/usr/lib/x86_64-linux-gnu/libz.so;vtkftgl;vtkDICOMParser;vtkDomainsChemistry;vtkIOXML;vtkIOGeometry;vtkIOCore;vtkIOXMLParser;/usr/lib/x86_64-linux-gnu/libexpat.so;vtkFiltersAMR;vtkParallelCore;vtkIOLegacy;vtkFiltersFlowPaths;vtkFiltersGeneric;vtkFiltersHybrid;vtkImagingSources;vtkFiltersHyperTree;vtkFiltersImaging;vtkImagingGeneral;vtkFiltersModeling;vtkFiltersParallel;vtkFiltersParallelFlowPaths;vtkParallelMPI;vtkFiltersParallelGeometry;vtkFiltersParallelImaging;vtkFiltersParallelMPI;vtkFiltersParallelStatistics;vtkFiltersProgrammable;vtkFiltersPython;/usr/lib/x86_64-linux-gnu/libpython2.7.so;vtkWrappingPythonCore;vtkWrappingTools;vtkFiltersReebGraph;vtkFiltersSMP;vtkFiltersSelection;vtkFiltersTexture;vtkFiltersVerdict;verdict;vtkGeovisCore;vtkInfovisLayout;vtkImagingHybrid;vtkIOImage;vtkmetaio;/usr/lib/x86_64-linux-gnu/libjpeg.so;/usr/lib/x86_64-linux-gnu/libpng.so;/usr/lib/x86_64-linux-gnu/libtiff.so;vtkInfovisBoostGraphAlgorithms;vtkInteractionStyle;vtkInteractionWidgets;vtkRenderingAnnotation;vtkImagingColor;vtkRenderingVolume;vtkViewsCore;/usr/lib/x86_64-linux-gnu/libproj.so;vtkIOAMR;/usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so;vtkIOEnSight;vtkIOExodus;vtkexoIIc;/usr/lib/x86_64-linux-gnu/libnetcdf_c++.so;/usr/lib/x86_64-linux-gnu/libnetcdf.so;vtkIOExport;vtkRenderingGL2PS;vtkRenderingContextOpenGL;vtkRenderingOpenGL;/usr/lib/x86_64-linux-gnu/libgl2ps.so;vtkRenderingLabel;vtkIOFFMPEG;vtkIOMovie;/usr/lib/x86_64-linux-gnu/libtheoraenc.so;/usr/lib/x86_64-linux-gnu/libtheoradec.so;/usr/lib/x86_64-linux-gnu/libogg.so;vtkIOGDAL;vtkIOGeoJSON;vtkIOImport;vtkIOInfovis;/usr/lib/x86_64-linux-gnu/libxml2.so;vtkIOLSDyna;vtkIOMINC;vtkIOMPIImage;vtkIOMPIParallel;vtkIOParallel;vtkIONetCDF;/usr/lib/x86_64-linux-gnu/libjsoncpp.so;vtkIOMySQL;vtkIOSQL;sqlite3;vtkIOODBC;vtkIOPLY;vtkIOParallelExodus;vtkIOParallelLSDyna;vtkIOParallelNetCDF;vtkIOParallelXML;vtkIOPostgreSQL;vtkIOVPIC;VPIC;vtkIOVideo;vtkIOXdmf2;vtkxdmf2;vtkImagingMath;vtkImagingMorphological;vtkImagingStatistics;vtkImagingStencil;vtkInteractionImage;vtkLocalExample;vtkParallelMPI4Py;vtkPythonInterpreter;vtkRenderingExternal;vtkRenderingFreeTypeFontConfig;vtkRenderingImage;vtkRenderingLIC;vtkRenderingLOD;vtkRenderingMatplotlib;vtkRenderingParallel;vtkRenderingParallelLIC;vtkRenderingVolumeAMR;vtkRenderingVolumeOpenGL;vtkTestingGenericBridge;vtkTestingIOSQL;vtkTestingRendering;vtkViewsContext2D;vtkViewsGeovis;vtkViewsInfovis;vtkWrappingJava  
-- __cplusplus is 201402
--   --> Do not link with Boost.Thread
-- Boost version: 1.65.1
-- Boost include dirs: /usr/include
-- Boost libraries:    
-- Boost version: 1.65.1
-- Found the following Boost libraries:
--   program_options
--   filesystem
--   system
CMake Error at cmake/FindSuiteSparse.cmake:460 (MESSAGE):
  SuiteSparse required but some headers or libs not found.
Call Stack (most recent call first):
  CMakeLists.txt:11 (find_package)


-- Configuring incomplete, errors occurred!
See also "/app/PCLBO/build/CMakeFiles/CMakeOutput.log".

See also "/app/PCLBO/build/CMakeFiles/CMakeError.log".

dvirginz avatar May 02 '19 06:05 dvirginz

@dvirginz To be honest I have moved on to different solutions and have not tried again.

themmes avatar May 02 '19 06:05 themmes

@dvirginz To be honest I have moved on to different solutions and have not tried again.

Have you found alternative solution for this problem? I can make successfully but I got no executed eigenfunction_visualize as well.

YongjianDeng avatar May 15 '19 06:05 YongjianDeng

For my case, I just change #include <cholmod.h> to #include <suitesparse/cholmod.h> in Core/src/Utils/CholeskyDecom.h

charley-chai avatar Aug 21 '19 03:08 charley-chai