GenoVi

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Genovi installation problem

3

Hello, Thank you for a really great tool. I was able to install it on my laptop at home with Ubuntu 20.04 LTS but failed on Ubuntu workstations. In the...

gaworj

Annotating/labelling genes

1

Hi, I've been using your tool for some time now to generate overviews of different genomes. I was wondering if there's a possibility to add custom labels/annotations to specific genes...

iwilkie

Python errors in running GenoVi

6

Hi, I was hoping to try out GenoVi to visualise a few of my genomes, but have run into an issue I was hoping you could help me with. From...

iwilkie

Hello! I keep getting this error when trying to run my genome: ``` There's been an error finding cairoSVG library, so PNG images might be different from expected. Please prefer...

Siljael

Drawing error

2

Hi, I am unable to get the diagram with the following error. The input file used is GBK format. I believe the software has been successfully installed. ``` $ genovi...

khoriba

--output_file does not work properly

5

Specifying an output directory with a relative path causes errors, e.g. this fails: $ mkdir genovi $ genovi -o genovi/blah ... Parsing path input with Pathlib Path(args.outfile).absolute() or os.path.abspath(args.outfile) would...

marade

Font size changes?

1

Hi, is it possible to change font sizes? for the title, for the size, for the size on the circle, and for the key. cheers

rjsorr

problem with NCBI genebank files

1

I encountered the following error when running genovi with a genebank file downloaded from NCBI (https://www.ncbi.nlm.nih.gov/nuccore/AL513382.1). I downloaded the files manually via `send to > complete record > file >...

AlcaArctica

How to label the diagram using gene or protein ids

BIN-PS

jupyter notebook example?

1

Could you create a jupyter notebook example?

vdejager