conkit

conkit copied to clipboard

core.contactmap match and match_naive functions now match_other=True …

1

In `core.contactmap` functions `match` and `match_naive` functions, now `match_other=True` ALWAYS signals FNs in `contact_map2`.

jjavier-bm

We need to let users select thresholds for the number of consecutive residues required to mark a region of the model as an error and the predicted score threshold of...

FilomenoSanchez

FASTA conversion into A3M should be gapless

1

The query sequence in the A3M format should be gapless as discussed in #96. The `hhstuite` provides a script [reformat.pl](https://github.com/soedinglab/hh-suite/blob/master/scripts/reformat.pl) capable of dealing with this, take a look and try...

FilomenoSanchez

A ConKit package containing source code for contact prediction written in (scikit-learn)[http://scikit-learn.org/]. Idea is to implement commonly used applications in Python. Possible first applications could be: - [ ] PSICOV...

fsimkovic