rust-alignbench

A pairwise alignment benchmark of a few libraries:

• Rust-bio
• Parasailors: https://github.com/anp/parasailors
• Block_aligner: https://github.com/Daniel-Liu-c0deb0t/block-aligner
• Libwfa: https://github.com/chfi/rs-wfa/
• Wfa2: https://github.com/tanghaibao/rust-wfa2
• ksw2: https://github.com/lh3/ksw2
• Scrooge: https://github.com/CMU-SAFARI/Scrooge

Running

Speed test: cargo bench

Alignment test: cargo test -- --show-output

Speed results