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Alternative to K-means clustering in infer_trajectory()

Open alikhuseynov opened this issue 4 years ago • 0 comments

Hi there, again, great tool!

Few questions:

  • I wonder if one can use an alternative clustering approach, instead of k-means? is this issue #3 relevant here? just want to clarify :)
  • ..if one can somehow supply infer_trajectory() with already existing clusters and see how it would predict the trajectory?
  • Also it looks like one has to provide eg set.seed(123) before running infer_trajectory() since k-means starts randomly.
  • what would you suggest on extract_modules() for large dataset? issue #32

Many Thanks A.

alikhuseynov avatar Nov 18 '21 15:11 alikhuseynov