cayenne

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### Update [pillow](https://pypi.org/project/pillow) from **10.2.0** to **10.3.0**. Changelog ### 10.3.0 ``` https://pillow.readthedocs.io/en/stable/releasenotes/10.3.0.html Changes - CVE-2024-28219: Use strncpy to avoid buffer overflow 7928 [hugovk] - Use `functools.lru_cache` for `hopper()` 7912 [hugovk]...

pyup-bot

Fixed the sim_seeds[index] to int(sim_seed[index])

inayat98

Bumps [certifi](https://github.com/certifi/python-certifi) from 2022.12.7 to 2023.7.22. Commits 8fb96ed 2023.07.22 afe7722 Bump actions/setup-python from 4.6.1 to 4.7.0 (#230) 2038739 Bump dessant/lock-threads from 3.0.0 to 4.0.1 (#229) 44df761 Hash pin Actions and...

dependabot[bot]

Bumps [ipython](https://github.com/ipython/ipython) from 7.16.1 to 7.16.3. Commits d43c7c7 release 7.16.3 5fa1e40 Merge pull request from GHSA-pq7m-3gw7-gq5x 8df8971 back to dev 9f477b7 release 7.16.2 138f266 bring back release helper from master...

dependabot[bot]

dileep-kishore

Add Progress Bar for Simulation.simulate

4

It would be nice to have a progress bar displayed during simulations (especially in Jupyter Notebook). However, since simulations end at either a specific time or iteration, maybe you would...

jonstrutz11

Sometimes you already know the stochastic rate constants and just want to specify those.

sriki18

Support for custom rate equations

1

Currently the user can only specify rate constants and the rate equations are implicit from the structure of the reaction. There should be support for custom rate equations independent of...

sriki18

dileep-kishore

1. Property for `k_det` (Currently if someone wants to estimate parameters they will have to create a new `Simulation` instance. This fixes that issue.) 2. `clear` method to clear the...

dileep-kishore