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nh13

Error, could not find any transcript sequences

5

Hello, when using Pizzly 0.37.3 (SeqAn 2.2.0) and Kallisto 0.43.1 with Ensembl 81 and one gets this error message from Pizzly: ``` Error, could not find any transcript sequences check...

ndaniel

First off, thanks for a fast and userfriendly tool. I have a validated fusion in my data and I'm interested in extracting in which exon the fusion/cuts occurred, i.e genomic...

jlgabre

Hi I'm curious because it looks like for Kallisto trimming might not be necessary however because of the need to generate the initial fusion library, do you think is necessary...

ahdee

Dear Team, I am using the tool Pizzly after running Kallisto. Initially, **I installed the tool using conda**. I created a **conda environment and then installed Kallisto and Pizzly within...

rahul-yadav-supra

Working version of pizzly available?

2

Hi, I'm wondering if anyone knows if there is an exact combination of tool versions and files which allows pizzly to work? I've tried various combinations of pizzly and kallisto,...

mapostolides

Hi, in the filtered fusions.fasta output run on a single sample, I found that the number of headers is larger than the number of unique sequences: ``` grep -v '>'...

racng

Hello, Are there instructions on where to install the files in scripts/* on UNIX ? The immediate reaction is to place them in /usr/bin. The downside is that "flatten_json" is...

smoe

Hello, I understand you derived the test/transcriptome.*.gz files from Ensembl. Could you please extend the test/README.md on how exactly these files were generated/copied from and point to https://www.ensembl.org/info/about/legal/index.html ? And...

smoe

"pizzly: Not enough arguments were provided"

1

Hello - not sure what I am doing wrong to get this error despite providing all necessary files in correct format with correct arguments. After running pizzly, I get "pizzly:...

AmrR101