BFCounter

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Hi! I am trying to quantify short kmers - so in this case 9mers. I used the following config: ./BFCounter count temp_${file}.fastq -k 9 -n 300000 -t 10 -o ${file}_bfoutput...

TrofimovAssya

The url in you paper is unavailable so that I cannot get the example data sets.

Terrdi

seg fault

1

Hi ... I would very much like to test your script ...but I do not seem to get it to work I have complied it ate testing running with: `BFCounter...

duartemolha

Hi We are working on analysis of Bioinformatics tools (related to Kmer counting) and BFCounter is one of them. We have gone through **readme** file and it is very helpful....

taranglute

Is the program easy to modify to show _k_-mers with a count of 1? This would be a helpful option.

standage

no output

1

both count and dump create no output with my fasta files ./BFCounter dump -k 5 -i ~/faireparsed/e16-18hr_faire/macs2.fa -o outfile help .. head ~/faireparsed/e16-18hr_faire/macs2.fa > 2L:287-539 > TCTTATATTACCGCAAACCCAAAAAGACAATACACGACAGAGAGAGAGAGCAGCGGAGATATTTAGATTGCCTATTAAATATGATCGCGTATGCGAGAGTAGTGCCAACATATTGTGCTCTCTATATAATGACTGCCTCTCATTCTGTCTTATTTTACCGCAAACCCAAATCGACAATGCACGACAGAGGAAGCAGAACAGATATTTAGATTGCCTCTCATTTTCTCTCCCATATTATAGGGAGAAATATGA > 2L:5543-5989 >...

onceupon