genipe
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pgxcentre
Genome-wide imputation pipeline
Hi, Have you got plans to update the pipeline to include Impute5 and Shapeit4? These new tools use/generate slightly different file formats. Thanks, Sathish
After installing and testing genipe as described in the documentation on http://pgxcentre.github.io/genipe/installation.html I created the directory `genipe_tutorial` and extracted the file `1000GP_Phase3.tgz` therein as described on http://pgxcentre.github.io/genipe/tutorials/tutorial_genipe.html#genipe-tut-more-details But the script...
This is mostly to look at the direction of effect or for simple burden analyses.
I optimized some aspects of the dosage and MAF computation in `gepyto`. Maybe we could use it in this project ([see this commit](https://github.com/legaultmarc/gepyto/commit/cb596664ec92cfede37159193932416402fdaacd)). :turtle: :arrow_right: :racehorse:
The current error message is not very intuitive (it's the R index error).
Perhaps it is me who misunderstood, but in the tutorial on survival analysis, we can see this line: `NA06994 569.4273004275149 0 48 20.2946857226 1` Where 569.4273004275149 is the time to...
User should be able to use custom templates for all of the sections of the automatic report (instead of using the one provided by the package).
