singleCellNet

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vignette link leads to Page not found

1

Hi, I wanted to try out the tool but the link to the vignette leads to a Page not found. Thanks

mengxiao-he

Hello, Is the SCN score a probability? Best, Alva

alvaannett

Fixes object 'exp_type' not found when loading single cell experiment object

Michael-Geuenich

Forcing all cells to be assigned?

1

Hi all, I was wondering if it's possible to classify cells such that all cells must be assigned a cell-type label (i.e. with no possibility of a cell falling into...

igrabski

dataset about viggette

1

I download the dataset with the link I get where is `stTM_raw_060719_demo.rda`,`expTM_raw_060719_demo.rda`,`stPBMC_demo.rda`,`expPBMC_demo.rda`, only `human_mouse_genes_Jul_24_2018.rda` is matched with the viggette

yuxiaokang-source

claissfier => classifier

GhislainFievet

Different result of "Visualize average top pairs genes expression for training data"

2

Hello Yuqi, **When I am running the "Visualize average top pairs genes expression for training data" part, there comes a big list of missing genes**  and a Warning message:...

hyjforesight

In the tutorial, when playing with the variable gene pairs, the function reported the **mising genes warning**. seed is 100, I am using version 0.1 (session info attached.) Could you...

ccshao

Ortholog Table for Cross-Species Comparisons

4

Dear Developer, Thank you for the comprehensive vignette; I've enjoyed learning this method, especially for cross-species analyses. Specifically, I am curious how you created the ortholog table. Would it be...

mhwadsworth91

Changes ncores to allow for user input in ptGetTop(), with the default value set to the previously defined value (detectCores()).

skannan4