patrickbryant1
Colab crashes due to error in Install dependencies step
Hello,
I am encountering some incompatibility issues between package versions that are preventing the Colab code from running properly (see below). I suspect that the problem may be related to the version of NumPy being used. Do you have any suggestions on how to resolve this issue?
Thank you.
Looking in links: https://storage.googleapis.com/jax-releases/jax_cuda_releases.html Requirement already satisfied: jax[cuda12_pip] in /usr/local/lib/python3.10/dist-packages (0.4.30) Requirement already satisfied: jaxlib<=0.4.30,>=0.4.27 in /usr/local/lib/python3.10/dist-packages (from jax[cuda12_pip]) (0.4.30) Requirement already satisfied: ml-dtypes>=0.2.0 in /usr/local/lib/python3.10/dist-packages (from jax[cuda12_pip]) (0.2.0) Requirement already satisfied: numpy>=1.22 in /usr/local/lib/python3.10/dist-packages (from jax[cuda12_pip]) (1.22.4) Requirement already satisfied: opt-einsum in /usr/local/lib/python3.10/dist-packages (from jax[cuda12_pip]) (3.3.0) Collecting scipy>=1.9 (from jax[cuda12_pip]) Using cached scipy-1.14.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (41.1 MB) Requirement already satisfied: jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30 in /usr/local/lib/python3.10/dist-packages (from jax[cuda12_pip]) (0.4.30) Requirement already satisfied: jax-cuda12-pjrt==0.4.30 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (0.4.30) Requirement already satisfied: nvidia-cublas-cu12>=12.1.3.1 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (12.5.3.2) Requirement already satisfied: nvidia-cuda-cupti-cu12>=12.1.105 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (12.5.82) Requirement already satisfied: nvidia-cuda-nvcc-cu12>=12.1.105 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (12.5.82) Requirement already satisfied: nvidia-cuda-runtime-cu12>=12.1.105 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (12.5.82) Requirement already satisfied: nvidia-cudnn-cu12<10.0,>=9.0 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (9.2.0.82) Requirement already satisfied: nvidia-cufft-cu12>=11.0.2.54 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (11.2.3.61) Requirement already satisfied: nvidia-cusolver-cu12>=11.4.5.107 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (11.6.3.83) Requirement already satisfied: nvidia-cusparse-cu12>=12.1.0.106 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (12.5.1.3) Requirement already satisfied: nvidia-nccl-cu12>=2.18.1 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (2.22.3) Requirement already satisfied: nvidia-nvjitlink-cu12>=12.1.105 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (12.5.82) Collecting numpy>=1.22 (from jax[cuda12_pip]) Using cached numpy-2.0.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.3 MB) Installing collected packages: numpy, scipy Attempting uninstall: numpy Found existing installation: numpy 1.22.4 Uninstalling numpy-1.22.4: Successfully uninstalled numpy-1.22.4 Attempting uninstall: scipy Found existing installation: scipy 1.7.3 Uninstalling scipy-1.7.3: Successfully uninstalled scipy-1.7.3 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. astropy 5.3.4 requires numpy<2,>=1.21, but you have numpy 2.0.0 which is incompatible. cudf-cu12 24.4.1 requires numpy<2.0a0,>=1.23, but you have numpy 2.0.0 which is incompatible. cudf-cu12 24.4.1 requires pandas<2.2.2dev0,>=2.0, but you have pandas 1.3.5 which is incompatible. cudf-cu12 24.4.1 requires protobuf<5,>=3.20, but you have protobuf 3.19.6 which is incompatible. cupy-cuda12x 12.2.0 requires numpy<1.27,>=1.20, but you have numpy 2.0.0 which is incompatible. ibis-framework 8.0.0 requires numpy<2,>=1, but you have numpy 2.0.0 which is incompatible. numba 0.58.1 requires numpy<1.27,>=1.22, but you have numpy 2.0.0 which is incompatible. optax 0.2.2 requires chex>=0.1.86, but you have chex 0.1.5 which is incompatible. pandas-gbq 0.19.2 requires google-auth-oauthlib>=0.7.0, but you have google-auth-oauthlib 0.4.6 which is incompatible. plotnine 0.12.4 requires pandas>=1.5.0, but you have pandas 1.3.5 which is incompatible. rmm-cu12 24.4.0 requires numpy<2.0a0,>=1.23, but you have numpy 2.0.0 which is incompatible. statsmodels 0.14.2 requires pandas!=2.1.0,>=1.4, but you have pandas 1.3.5 which is incompatible. tensorflow-datasets 4.9.6 requires protobuf>=3.20, but you have protobuf 3.19.6 which is incompatible. tf-keras 2.15.1 requires tensorflow<2.16,>=2.15, but you have tensorflow 2.11.0 which is incompatible. thinc 8.2.5 requires numpy<2.0.0,>=1.19.0; python_version >= "3.9", but you have numpy 2.0.0 which is incompatible. xarray 2023.7.0 requires pandas>=1.4, but you have pandas 1.3.5 which is incompatible. Successfully installed numpy-2.0.0 scipy-1.14.0 Requirement already satisfied: ml-collections==0.1.1 in /usr/local/lib/python3.10/dist-packages (0.1.1) Requirement already satisfied: absl-py in /usr/local/lib/python3.10/dist-packages (from ml-collections==0.1.1) (1.4.0) Requirement already satisfied: PyYAML in /usr/local/lib/python3.10/dist-packages (from ml-collections==0.1.1) (6.0.1) Requirement already satisfied: six in /usr/local/lib/python3.10/dist-packages (from ml-collections==0.1.1) (1.16.0) Requirement already satisfied: contextlib2 in /usr/local/lib/python3.10/dist-packages (from ml-collections==0.1.1) (21.6.0) Requirement already satisfied: dm-haiku==0.0.11 in /usr/local/lib/python3.10/dist-packages (0.0.11) Requirement already satisfied: absl-py>=0.7.1 in /usr/local/lib/python3.10/dist-packages (from dm-haiku==0.0.11) (1.4.0) Requirement already satisfied: jmp>=0.0.2 in /usr/local/lib/python3.10/dist-packages (from dm-haiku==0.0.11) (0.0.4) Requirement already satisfied: numpy>=1.18.0 in /usr/local/lib/python3.10/dist-packages (from dm-haiku==0.0.11) (2.0.0) Requirement already satisfied: tabulate>=0.8.9 in /usr/local/lib/python3.10/dist-packages (from dm-haiku==0.0.11) (0.9.0) Requirement already satisfied: flax>=0.7.1 in /usr/local/lib/python3.10/dist-packages (from dm-haiku==0.0.11) (0.8.4) Requirement already satisfied: jax>=0.4.19 in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (0.4.30) Requirement already satisfied: msgpack in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (1.0.8) Requirement already satisfied: optax in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (0.2.2) Requirement already satisfied: orbax-checkpoint in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (0.4.4) Requirement already satisfied: tensorstore in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (0.1.45) Requirement already satisfied: rich>=11.1 in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (13.7.1) Requirement already satisfied: typing-extensions>=4.2 in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (4.12.2) Requirement already satisfied: PyYAML>=5.4.1 in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (6.0.1) Requirement already satisfied: jaxlib<=0.4.30,>=0.4.27 in /usr/local/lib/python3.10/dist-packages (from jax>=0.4.19->flax>=0.7.1->dm-haiku==0.0.11) (0.4.30) Requirement already satisfied: ml-dtypes>=0.2.0 in /usr/local/lib/python3.10/dist-packages (from jax>=0.4.19->flax>=0.7.1->dm-haiku==0.0.11) (0.2.0) Requirement already satisfied: opt-einsum in /usr/local/lib/python3.10/dist-packages (from jax>=0.4.19->flax>=0.7.1->dm-haiku==0.0.11) (3.3.0) Requirement already satisfied: scipy>=1.9 in /usr/local/lib/python3.10/dist-packages (from jax>=0.4.19->flax>=0.7.1->dm-haiku==0.0.11) (1.14.0) Requirement already satisfied: markdown-it-py>=2.2.0 in /usr/local/lib/python3.10/dist-packages (from rich>=11.1->flax>=0.7.1->dm-haiku==0.0.11) (3.0.0) Requirement already satisfied: pygments<3.0.0,>=2.13.0 in /usr/local/lib/python3.10/dist-packages (from rich>=11.1->flax>=0.7.1->dm-haiku==0.0.11) (2.16.1) Collecting chex>=0.1.86 (from optax->flax>=0.7.1->dm-haiku==0.0.11) Using cached chex-0.1.86-py3-none-any.whl (98 kB) Requirement already satisfied: etils[epath,epy] in /usr/local/lib/python3.10/dist-packages (from orbax-checkpoint->flax>=0.7.1->dm-haiku==0.0.11) (1.7.0) Requirement already satisfied: nest_asyncio in /usr/local/lib/python3.10/dist-packages (from orbax-checkpoint->flax>=0.7.1->dm-haiku==0.0.11) (1.6.0) Requirement already satisfied: protobuf in /usr/local/lib/python3.10/dist-packages (from orbax-checkpoint->flax>=0.7.1->dm-haiku==0.0.11) (3.19.6) Requirement already satisfied: toolz>=0.9.0 in /usr/local/lib/python3.10/dist-packages (from chex>=0.1.86->optax->flax>=0.7.1->dm-haiku==0.0.11) (0.12.1) Requirement already satisfied: mdurl~=0.1 in /usr/local/lib/python3.10/dist-packages (from markdown-it-py>=2.2.0->rich>=11.1->flax>=0.7.1->dm-haiku==0.0.11) (0.1.2) Requirement already satisfied: fsspec in /usr/local/lib/python3.10/dist-packages (from etils[epath,epy]->orbax-checkpoint->flax>=0.7.1->dm-haiku==0.0.11) (2023.6.0) Requirement already satisfied: importlib_resources in /usr/local/lib/python3.10/dist-packages (from etils[epath,epy]->orbax-checkpoint->flax>=0.7.1->dm-haiku==0.0.11) (6.4.0) Requirement already satisfied: zipp in /usr/local/lib/python3.10/dist-packages (from etils[epath,epy]->orbax-checkpoint->flax>=0.7.1->dm-haiku==0.0.11) (3.19.2) Installing collected packages: chex Attempting uninstall: chex Found existing installation: chex 0.1.5 Uninstalling chex-0.1.5: Successfully uninstalled chex-0.1.5 Successfully installed chex-0.1.86 Requirement already satisfied: pandas==1.3.5 in /usr/local/lib/python3.10/dist-packages (1.3.5) Requirement already satisfied: python-dateutil>=2.7.3 in /usr/local/lib/python3.10/dist-packages (from pandas==1.3.5) (2.8.2) Requirement already satisfied: pytz>=2017.3 in /usr/local/lib/python3.10/dist-packages (from pandas==1.3.5) (2023.4) Requirement already satisfied: numpy>=1.21.0 in /usr/local/lib/python3.10/dist-packages (from pandas==1.3.5) (2.0.0) Requirement already satisfied: six>=1.5 in /usr/local/lib/python3.10/dist-packages (from python-dateutil>=2.7.3->pandas==1.3.5) (1.16.0) Requirement already satisfied: biopython==1.81 in /usr/local/lib/python3.10/dist-packages (1.81) Requirement already satisfied: numpy in /usr/local/lib/python3.10/dist-packages (from biopython==1.81) (2.0.0) Collecting chex==0.1.5 Using cached chex-0.1.5-py3-none-any.whl (85 kB) Requirement already satisfied: absl-py>=0.9.0 in /usr/local/lib/python3.10/dist-packages (from chex==0.1.5) (1.4.0) Requirement already satisfied: dm-tree>=0.1.5 in /usr/local/lib/python3.10/dist-packages (from chex==0.1.5) (0.1.8) Requirement already satisfied: jax>=0.1.55 in /usr/local/lib/python3.10/dist-packages (from chex==0.1.5) (0.4.30) Requirement already satisfied: jaxlib>=0.1.37 in /usr/local/lib/python3.10/dist-packages (from chex==0.1.5) (0.4.30) Requirement already satisfied: numpy>=1.18.0 in /usr/local/lib/python3.10/dist-packages (from chex==0.1.5) (2.0.0) Requirement already satisfied: toolz>=0.9.0 in /usr/local/lib/python3.10/dist-packages (from chex==0.1.5) (0.12.1) Requirement already satisfied: ml-dtypes>=0.2.0 in /usr/local/lib/python3.10/dist-packages (from jax>=0.1.55->chex==0.1.5) (0.2.0) Requirement already satisfied: opt-einsum in /usr/local/lib/python3.10/dist-packages (from jax>=0.1.55->chex==0.1.5) (3.3.0) Requirement already satisfied: scipy>=1.9 in /usr/local/lib/python3.10/dist-packages (from jax>=0.1.55->chex==0.1.5) (1.14.0) Installing collected packages: chex Attempting uninstall: chex Found existing installation: chex 0.1.86 Uninstalling chex-0.1.86: Successfully uninstalled chex-0.1.86 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. optax 0.2.2 requires chex>=0.1.86, but you have chex 0.1.5 which is incompatible. Successfully installed chex-0.1.5 Requirement already satisfied: dm-tree==0.1.8 in /usr/local/lib/python3.10/dist-packages (0.1.8) Requirement already satisfied: immutabledict==2.0.0 in /usr/local/lib/python3.10/dist-packages (2.0.0) Requirement already satisfied: numpy in /usr/local/lib/python3.10/dist-packages (2.0.0) Collecting scipy==1.7.3 Using cached scipy-1.7.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (39.9 MB) Collecting numpy<1.23.0,>=1.16.5 (from scipy==1.7.3) Using cached numpy-1.22.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.8 MB) Installing collected packages: numpy, scipy Attempting uninstall: numpy Found existing installation: numpy 2.0.0 Uninstalling numpy-2.0.0: Successfully uninstalled numpy-2.0.0 Attempting uninstall: scipy Found existing installation: scipy 1.14.0 Uninstalling scipy-1.14.0: Successfully uninstalled scipy-1.14.0 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. arviz 0.15.1 requires scipy>=1.8.0, but you have scipy 1.7.3 which is incompatible. cudf-cu12 24.4.1 requires numpy<2.0a0,>=1.23, but you have numpy 1.22.4 which is incompatible. cudf-cu12 24.4.1 requires pandas<2.2.2dev0,>=2.0, but you have pandas 1.3.5 which is incompatible. cudf-cu12 24.4.1 requires protobuf<5,>=3.20, but you have protobuf 3.19.6 which is incompatible. jax 0.4.30 requires scipy>=1.9, but you have scipy 1.7.3 which is incompatible. jaxlib 0.4.30 requires scipy>=1.9, but you have scipy 1.7.3 which is incompatible. numexpr 2.10.1 requires numpy>=1.23.0, but you have numpy 1.22.4 which is incompatible. optax 0.2.2 requires chex>=0.1.86, but you have chex 0.1.5 which is incompatible. pandas-gbq 0.19.2 requires google-auth-oauthlib>=0.7.0, but you have google-auth-oauthlib 0.4.6 which is incompatible. pandas-stubs 2.0.3.230814 requires numpy>=1.25.0; python_version >= "3.9", but you have numpy 1.22.4 which is incompatible. plotnine 0.12.4 requires numpy>=1.23.0, but you have numpy 1.22.4 which is incompatible. plotnine 0.12.4 requires pandas>=1.5.0, but you have pandas 1.3.5 which is incompatible. rmm-cu12 24.4.0 requires numpy<2.0a0,>=1.23, but you have numpy 1.22.4 which is incompatible. statsmodels 0.14.2 requires pandas!=2.1.0,>=1.4, but you have pandas 1.3.5 which is incompatible. statsmodels 0.14.2 requires scipy!=1.9.2,>=1.8, but you have scipy 1.7.3 which is incompatible. tensorflow-datasets 4.9.6 requires protobuf>=3.20, but you have protobuf 3.19.6 which is incompatible. tf-keras 2.15.1 requires tensorflow<2.16,>=2.15, but you have tensorflow 2.11.0 which is incompatible. xarray 2023.7.0 requires pandas>=1.4, but you have pandas 1.3.5 which is incompatible. xarray-einstats 0.7.0 requires scipy>=1.8, but you have scipy 1.7.3 which is incompatible. Successfully installed numpy-1.22.4 scipy-1.7.3 WARNING: The following packages were previously imported in this runtime: [numpy] You must restart the runtime in order to use newly installed versions. Requirement already satisfied: tensorflow==2.11.0 in /usr/local/lib/python3.10/dist-packages (2.11.0) Requirement already satisfied: absl-py>=1.0.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (1.4.0) Requirement already satisfied: astunparse>=1.6.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (1.6.3) Requirement already satisfied: flatbuffers>=2.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (24.3.25) Requirement already satisfied: gast<=0.4.0,>=0.2.1 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (0.4.0) Requirement already satisfied: google-pasta>=0.1.1 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (0.2.0) Requirement already satisfied: grpcio<2.0,>=1.24.3 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (1.64.1) Requirement already satisfied: h5py>=2.9.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (3.9.0) Requirement already satisfied: keras<2.12,>=2.11.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (2.11.0) Requirement already satisfied: libclang>=13.0.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (18.1.1) Requirement already satisfied: numpy>=1.20 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (1.22.4) Requirement already satisfied: opt-einsum>=2.3.2 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (3.3.0) Requirement already satisfied: packaging in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (24.1) Requirement already satisfied: protobuf<3.20,>=3.9.2 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (3.19.6) Requirement already satisfied: setuptools in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (67.7.2) Requirement already satisfied: six>=1.12.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (1.16.0) Requirement already satisfied: tensorboard<2.12,>=2.11 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (2.11.2) Requirement already satisfied: tensorflow-estimator<2.12,>=2.11.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (2.11.0) Requirement already satisfied: termcolor>=1.1.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (2.4.0) Requirement already satisfied: typing-extensions>=3.6.6 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (4.12.2) Requirement already satisfied: wrapt>=1.11.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (1.14.1) Requirement already satisfied: tensorflow-io-gcs-filesystem>=0.23.1 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (0.37.0) Requirement already satisfied: wheel<1.0,>=0.23.0 in /usr/local/lib/python3.10/dist-packages (from astunparse>=1.6.0->tensorflow==2.11.0) (0.43.0) Requirement already satisfied: google-auth<3,>=1.6.3 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (2.27.0) Requirement already satisfied: google-auth-oauthlib<0.5,>=0.4.1 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (0.4.6) Requirement already satisfied: markdown>=2.6.8 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (3.6) Requirement already satisfied: requests<3,>=2.21.0 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (2.31.0) Requirement already satisfied: tensorboard-data-server<0.7.0,>=0.6.0 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (0.6.1) Requirement already satisfied: tensorboard-plugin-wit>=1.6.0 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (1.8.1) Requirement already satisfied: werkzeug>=1.0.1 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (3.0.3) Requirement already satisfied: cachetools<6.0,>=2.0.0 in /usr/local/lib/python3.10/dist-packages (from google-auth<3,>=1.6.3->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (5.3.3) Requirement already satisfied: pyasn1-modules>=0.2.1 in /usr/local/lib/python3.10/dist-packages (from google-auth<3,>=1.6.3->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (0.4.0) Requirement already satisfied: rsa<5,>=3.1.4 in /usr/local/lib/python3.10/dist-packages (from google-auth<3,>=1.6.3->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (4.9) Requirement already satisfied: requests-oauthlib>=0.7.0 in /usr/local/lib/python3.10/dist-packages (from google-auth-oauthlib<0.5,>=0.4.1->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (1.3.1) Requirement already satisfied: charset-normalizer<4,>=2 in /usr/local/lib/python3.10/dist-packages (from requests<3,>=2.21.0->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (3.3.2) Requirement already satisfied: idna<4,>=2.5 in /usr/local/lib/python3.10/dist-packages (from requests<3,>=2.21.0->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (3.7) Requirement already satisfied: urllib3<3,>=1.21.1 in /usr/local/lib/python3.10/dist-packages (from requests<3,>=2.21.0->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (2.0.7) Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.10/dist-packages (from requests<3,>=2.21.0->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (2024.6.2) Requirement already satisfied: MarkupSafe>=2.1.1 in /usr/local/lib/python3.10/dist-packages (from werkzeug>=1.0.1->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (2.1.5) Requirement already satisfied: pyasn1<0.7.0,>=0.4.6 in /usr/local/lib/python3.10/dist-packages (from pyasn1-modules>=0.2.1->google-auth<3,>=1.6.3->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (0.6.0) Requirement already satisfied: oauthlib>=3.0.0 in /usr/local/lib/python3.10/dist-packages (from requests-oauthlib>=0.7.0->google-auth-oauthlib<0.5,>=0.4.1->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (3.2.2) Requirement already satisfied: rdkit-pypi in /usr/local/lib/python3.10/dist-packages (2022.9.5) Requirement already satisfied: numpy in /usr/local/lib/python3.10/dist-packages (from rdkit-pypi) (1.22.4) Requirement already satisfied: Pillow in /usr/local/lib/python3.10/dist-packages (from rdkit-pypi) (9.4.0) Requirement already satisfied: py3Dmol in /usr/local/lib/python3.10/dist-packages (2.1.0)
I just tested it again and it works. Please let all dependencies install until the end before you restart the runtime. We are sorry this step is so ugly, but we can't really control this through Colab.
