hint tl -m test.hic -f juicer --refdir /home/stutik/testData/hint-files/hg19/ --backdir /home/stutik/testData/hint-files/background/hg19 -g hg19 -n 4DNFICSTCJQZ -c 50
--ppath /home/stutik/pyhtn3/envs/myenv/bin/pairix -p 30 -o HiNTtransl_juicerOUTPUT2
[15:36:59] Argument List:
[15:36:59] Hi-C contact matrix = test.hic
[15:36:59] Hi-C contact matrix format = juicer
[15:36:59] Genome = hg19
[15:36:59] Name = 4DNFICSTCJQZ
[15:36:59] Output directory = HiNTtransl_juicerOUTPUT2
[15:36:59] Prepare Matrices!
HiC version: 8
Traceback (most recent call last):
File "/home/stutik/python3/envs/myenv1/bin/hint", line 197, in
main()
File "/home/stutik/python3/envs/myenv1/bin/hint", line 193, in main
translrun(argparser)
File "/home/stutik/python3/envs/myenv1/lib/python3.6/site-packages/HiNT/runhint.py", line 112, in translrun
matrix1MbInfo = hicToMatrix(opts.matrixfile, 1000, chromlengthf, opts.outdir, opts.name)
File "/home/stutik/python3/envs/myenv1/lib/python3.6/site-packages/HiNT/hicToMatrix.py", line 44, in hicToMatrix
dumpMatrix(chrom1, chrom2, resolution, hicfile, chromInfo,outputname)
File "/home/stutik/python3/envs/myenv1/lib/python3.6/site-packages/HiNT/hicToMatrix.py", line 29, in dumpMatrix
res = coo_matrix((data, (row, col)), shape=(binnumber1, binnumber2)).toarray()
File "/home/stutik/python3/envs/myenv1/lib/python3.6/site-packages/scipy/sparse/coo.py", line 154, in init
self._shape = check_shape((M, N))
File "/home/stutik/python3/envs/myenv1/lib/python3.6/site-packages/scipy/sparse/sputils.py", line 278, in check_shape
new_shape = tuple(operator.index(arg) for arg in args)
File "/home/stutik/python3/envs/myenv1/lib/python3.6/site-packages/scipy/sparse/sputils.py", line 278, in
new_shape = tuple(operator.index(arg) for arg in args)
TypeError: 'numpy.float64' object cannot be interpreted as an integer
parklab
