background matrix

Open distilledchild opened this issue 4 years ago • 2 comments

I am curious that I can get background matrix for the reference, mRatNor1, https://vgp.github.io/genomeark/Rattus_norvegicus/

Can I make background matrix myself?

Sep 09 '21 17:09 distilledchild

Hi, this is Xiaotao, we recently developed a new method called EagleC (https://github.com/XiaoTaoWang/EagleC) for detecting SVs from 3C-based data. EagleC does not need a background matrix for SV detection and support any genome in theory. Take a look and hope it is useful in your project!

Jun 14 '22 19:06 XiaoTaoWang

@XiaoTaoWang Thank you for the tool, and I will try that one! Thank you.

Jun 15 '22 17:06 distilledchild