owmeta
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openworm
Unified, simple data access python library for data & facts about C. elegans anatomy
Go through the source and add any explanations to any public methods (those not starting with '_') that ended up undocumented.
We often have data sources that don't come with a citation attached. We want a generic way to attach such information so that translators can propagate this information. This should...
[Channelpedia] is a repository parameterized ion channel models produced by the [Blue Brain project] from digitizing plots and fitting parameters (similar to ChannelWorm). The goal in this issue is to...
ChannelWorm produces data which should be stored in an owmeta bundle. To achieve this, a DataSource subclass should be created which describes records derived from ChannelWorm. A corresponding DataTranslator should...
Incorporate the facts from [this spreadsheet](https://docs.google.com/spreadsheets/d/1Dc0FlreJ06cpZo_rFLTnsp4iYPUzPa0a85uMwCGjxoY/edit#gid=0) into the openworm/owmeta-data bundle. Requirements: - Must include references listed in the document as appropriate Document/Evidence - Must use DataSource / DataTranslator for translating...
Current list is in c302/c302/data/adopters.txt Sub-tasks * Define a FileDataSource for the adopters.txt file in owmeta/sources.py * Define a property for attaching openworm supporters -- the URI should be under...
Set the doctests to run not only on the README.md but also on the examples that are now baked into the source code.
After #401, it was found that of the neural connection records in the Shterionov connectome dataset, 590 are not in our standard *C. elegans* connectome dataset from wormwiring.org. It was...
http://cole-trapnell-lab.github.io/projects/worm-cell-atlas/ There are many ways this could help. This should improve accuracy of several of the [data sources](https://pyopenworm.readthedocs.io/en/latest/data_sources.html), including neuropeptides, neuro receptors, and ion channels. Direct link to the getting...
The linked spreadsheet contains mappings from named ion channels to a adult neurons. A similar mapping should be generated for muscle cells based on the text descriptions already given in...