muscle_model

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Add to the readme to create a well cited and reasoned case for the ideal set of ion channels that should be in the muscle model

8

Currently the ion channels we have in the model are known to be simplifications. We'll close this issue when we have found some references that tell us what channels should...

slarson

SciUnit test to reproduce additional muscle patch clamp data in the muscle model

7

Currently, a notebook that executes one of the muscle models being run out of c302 is [here](https://github.com/lungd/CElegansNeuroML/blob/docker-notebook/CElegans/pythonScripts/c302/notebooks/RunMuscleModel.ipynb) We want to fit this to existing data. Figures are [here](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3039263/figure/fig01/) Ideally we'd...

slarson

Write SciUnit validation tests for muscle_model

10

This issue can be closed when two tests of connectivity are implemented and incorporated into the test suite using SciUnit - [ ] Make a README.md for the data we...

travs

[WIP] Add test for vclamp.m

4

souravsingh

Write doctests for muscle_model

16

- [ ] Make sure examples in each of the README files exist and are being tested - [ ] Integrate with TravisCI

travs

Check for performance regressions in testing suite

1

This can take advantage of the work @kevcmk and @cheelee are doing for PyOpenWorm. @travs

gsarma

Create unit test that verifies correct I/V curve for ca_boyle NML2 channel

13

We currently have a process to run the [iv_analyse.py](https://github.com/openworm/BlueBrainProjectShowcase/blob/master/Channelpedia/iv_analyse.py) script on the output of the [analyse_ca_boyle.sh](https://github.com/openworm/muscle_model/blob/master/NeuroML2/analyse_ca_boyle.sh) script. This produces a figure. We'd like to augment this process with an automated...

slarson

Create a drawing something like [the one we made for ChannelWorm's validation tests](https://cloud.githubusercontent.com/assets/7369273/7517933/7d752578-f4b2-11e4-8f0c-3335031a85e6.png), with each step concrete, then work on making a template for such a test.

travs

Write docstrings for each test class.

travs

travs