c302
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openworm
The c302 framework for generating multiscale network models of C. elegans
This is for the Readme, in Usage Examples: Section 2) Use command line interface to create new network Specifically, for this command line example code: c302 MyNetwork parameters_C -cells ["AVBR","VD3"]...
Hello, respected developer. I have two questions. The first one is that I want to transplant the neural network computation of C302 to my neural morphology chip. However, currently my...
This command in the README: c302 MyNetwork parameters_C -cells ["AVBR","VD3"] -cellstostimulate ["AVBR"] -paramoverride {"unphysiological_offset_current":"2.9pA"} -duration 300 Does not execute as-is in some shells, like ZSH, which attempt to parse `["AVBR","VD3"]`...
Depends on openworm/owmeta#467
Should accept a DataWithEvidenceDataSource identifier for the source of neuron network and muscle data, etc. blocked by #12
Hello now i am trying to simulate the c302 neurons of the worm. so i have done : git clone https://github.com/openworm/c302.git cd c302 python setup.py install  sh test.sh and...
OpenWormReader will undoubtedly take longer. Must determine whether the difference is substatial enough to merit doing query of the PyOW database at a different phase (i.e., with a `pow translate`)....
Relative imports break in possibly unexpected ways when you run a script from inside of its package directory rather than let python do it for you with `-m`
As a first approximation, can just hard-code `` as the context to query against (it's sort of the 'top-level' context produced by insert_worm.py into the OpenWormData repo). Will be modified...