research-template

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Update README.md

1

Amendments to readme template

HelenCEBM

This addresses https://github.com/ebmdatalab/service-analytics-team/issues/254. This is draft as it requires the text pointing to codespaces to be finalised. Closes https://github.com/ebmdatalab/service-analytics-team/issues/254

LFISHER7

Use arrow format

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Feather format is smaller than CSV, i.e. more efficient on space/processing, and stores dtypes, helping to avoid some problems when loading the data for further processing. We initially moved to...

HelenCEBM

Add some example actions for r/python/stata

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bloodearnest

Currently, there is an MIT licence included in the template. That, presumably, is the licence under which we distribute this template. Researchers then continue to implicitly use that licence for...

StevenMaude

Investigate using organisation secret for Stata License key

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**Timebox: 1/2 day** We currently require read permission to the opensafely/server-instructions repo such that OpenSAFELY CLI can contact it to get the Stata license key. https://github.com/opensafely/research-template/blob/c083d8f010faffb9beca747be29dbb3d78cd4b17/.devcontainer/devcontainer.json#L23-L26 This [was added](https://github.com/opensafely/research-template/pull/125) in...

Jongmassey

- Part of [upgrading pipeline to version 4](https://github.com/orgs/opensafely-core/projects/15/views/1?pane=issue&itemId=81337702&issue=opensafely-core%7Cpipeline%7C224) - Version 4 of pipeline removes support for cohort extractor and the `project.yaml` file should not have an `expectations` section.

alarthast

The default devcontainer config adds a pre-registered port 8787, and gives it the label "RStudio IDE". This label seems to be correctly picked up as part of the codespace configuration,...

bloodearnest

Improve container startup time and simplify maintenance by not using custom image

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# Why are we doing this? We currently build a custom docker [image](https://github.com/opensafely-core/research-template-docker) that is referenced in this template's `devcontainer.json`. The build process for this is moderately complicated and "bakes...

Jongmassey

PoC: Use MS devcontainer base image

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re #147 Base on MS devcontainer Jammy image to match OpenSAFELY base image. Install R/Python and their dependencies. Use `docker cp` to copy the R/Python library files to the host...

Jongmassey