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Adding Seurat's RPCA method to Benchmarking tasks?

Open andrewdchen opened this issue 1 year ago • 3 comments

Hello!

I noticed that Seurat's RPCA integration method was not included in either the 'Batch integration embed' task or the 'Batch integration feature' task. I know that RPCA is capable of both and it's a method that is often the first off-the-shelf R method that people choose, so I would be interested in seeing this added. I would also be happy to work on this too!

andrewdchen avatar May 23 '24 14:05 andrewdchen

Hi @andrewdchen,

Please feel free to add the method. We'd love to see it included here. @danielStrobl: you had started adding it as well, no? Were there environment handling issues?

LuckyMD avatar May 23 '24 20:05 LuckyMD

You can use the the documentation to guide you and you can always ask us for guidance. https://openproblems.bio/documentation/create_component/add_a_method

We also have a coworking session on the Openproblems Discord on Friday. https://openproblems.bio/events/weekly_coworking/

KaiWaldrant avatar May 23 '24 21:05 KaiWaldrant

I think that was in v1 where I was having the environment issues with seurat

danielStrobl avatar May 24 '24 06:05 danielStrobl