Niklas Schandry

I am not sure if my advice is the best strategy, please take a look at some modules in this repo that have complex configurations and think about which is...

Thanks @mahesh-panchal, using the correct builder is a much better approach than trying to use replace to make the yaml into a toml, however I am unable to use `groovy.toml.TomlBuilder()`...

That would add a dependency for dasel I guess. Based on your suggestion of using a `meta` map, here is what I came up with: ```groovy script: nextdonovo_parameters = [...

Thats likely a better approach, I guess I misunderstood regarding the `meta` map for those params. It makes sense to supply them as a separate channel. What about something that...

Turns out I did not actually delete the broken storage directory, but a different storage directory.. My charliecloud storage setup is getting a bit too complex for me it seems....

Actually, this turned out to be a problem with my samplesheet, sorry.

I would like to reopen the issue, since I do not think it is an issue with my samplesheet. Rather, it seems like #nf-core/nanoseq/blob/master/subworkflows/local/align_minimap2.nf#L21 does `cross` genome and fastq channels,...