ERROR Binaries

[Beta-INC]

Hi

I try to analyze a sample, but when running the basic option of tormes (-m and -o) it indicates the following error: grep: /home/dell/miniconda3/envs/tormes-1.2.1/bin/../files/config_file.txt: No existe el archivo o el directorio

Thanks for using tormes version 1.2.1 Let's check that all software are properly installed and all the data included in the metadata file is correct

/home/dell/Documentos/Secuencias/Genomasvolcan/PB-report/metadata.R: línea 1: error sintáctico cerca del elemento inesperado (' /home/dell/Documentos/Secuencias/Genomasvolcan/PB-report/metadata.R: línea 1: metadata=read.table("/home/dell/Documentos/Secuencias/Genomasvolcan/PB-report/metadata.tmp", header = T, sep = "\t", dec = ".")' cut: /home/dell/Documentos/Secuencias/Genomasvolcan/PB-report/reads.tmp: No existe el archivo o el directorio Software: found

ERROR: Binaries for MAUVE not found! Please check if: * Binaries are not installed * Binaries are installed but the path in /home/dell/miniconda3/envs/tormes-1.2.1/bin/../files/config_file.txt is incorrect

Can you help me?? Thanks :)

[nmquijada]

Hi!

It looks that your tormes config_file.txt is missing. Did you run tormes-setup after installing tormes with conda? We are transitioning tormes to version 1.3.0, that will (hopely) be ready in a few days. Therefore, if you performed the installation properly as it says in the instructions (https://github.com/nmquijada/tormes#installation), I would suggest you to wait for the newer version, as the oldest ones won't be maintained. I will keep you updated ;)

Thanks!

[nmquijada]

Hi again,

We just released the v1.3.0 of TORMES :)

Would you mind to uninstall your former version and try out the new one? For doing so:

#UNINSTALLING
conda env remove -n tormes-1.2.1
conda clean --all

#INSTALLING
wget https://anaconda.org/nmquijada/tormes-1.3.0/2021.06.08.113021/download/tormes-1.3.0.yml
conda env create -n tormes-1.3.0 --file tormes-1.3.0.yml
conda activate tormes-1.3.0
tormes-setup

Thanks! Narciso

[Beta-INC]

thank you very much for your help!!!

I have not had the opportunity to work with that, but I will do it shortly and I will inform you how it went.

Greetings

Betsy

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El mar, 8 de jun. de 2021 a la(s) 08:19, Narciso Martin Quijada ( @.***) escribió:

Hi again,

We just released the v1.3.0 of TORMES :)

Would you mind to uninstall your former version and try out the new one? For doing so:

#UNINSTALLING conda env remove -n tormes-1.2.1 conda clean --all

#INSTALLING wget https://anaconda.org/nmquijada/tormes-1.3.0/2021.06.08.113021/download/tormes-1.3.0.yml conda env create -n tormes-1.3.0 --file tormes-1.3.0.yml conda activate tormes-1.3.0 tormes-setup

Thanks! Narciso

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