nanopore-basecalling-scripts
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readme formatting for live albacore basecalling not right
To make this a little more friendly to those not familiar with bash, maybe change the formatting of rm -rf staging python stageflowcells.py data basecalls staging read_fast5_basecaller.py -r -i staging/$flowcell -s basecalls/$flowcell ...
to the executable block of code ...
#!/bin/bash
flowcell=<YOUR_FLOWCELL_NUMBER_HERE>
while true;
do
rm -rf staging;
python stageflowcells.py data basecalls staging
read_fast5_basecaller.py -r -i staging/"${flowcell}" -s basecalls/"${flowcell}"
sleep 10 ;
done