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Create a samplesheet for funcscan

Open jasmezz opened this issue 1 year ago • 5 comments

Description of feature

This would generate a samplesheet that is directly compatible with funcscan.

jasmezz avatar Oct 10 '24 08:10 jasmezz

Will be worked on in #688

jasmezz avatar Oct 10 '24 12:10 jasmezz

I'll upvote for this feature

vdejager avatar Mar 07 '25 09:03 vdejager

I assume that this will use, by default, the original sample names from mag as sample names for funcscan. In addition to this, it would be helpful to have the option of using bin IDs from mag as sample names for funcscan.

amizeranschi avatar Mar 29 '25 08:03 amizeranschi

Good point @amizeranschi !

jfy133 avatar Mar 31 '25 11:03 jfy133

Current status: we were waiting for a bug fix in nextflow itself which came out s couple of months ago. Just need to find time for the meta-omics group to have a new hackathon

jfy133 avatar Mar 31 '25 11:03 jfy133