DSL2: Print Nuclear Contamination JSON `N/A` value

Open TCLamnidis opened this issue 2 years ago • 2 comments

The print nuclear contaminatino script produces a JSON with the results, in which the na value is set to "N/A". This should be replaced with a valid JSON missing value (null?) so that loading of the JSON for downstream processing does not raise errors (strings vs floats).

Jun 07 '23 13:06 TCLamnidis

See https://github.com/multimeric/TidyMultiqc/issues/9 for a similar issue with NaNs

Jun 07 '23 13:06 TCLamnidis

As of #1004, we now print "none" in the nuclear_contamination.txt and "null" in the nuclear_contamination.json. Will need to observe how MultiQC behaves

Jun 23 '23 14:06 scarlhoff