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Output .bed file not found in the MACS2 folder

Open GopishankarThirumoorthy opened this issue 1 year ago • 1 comments

I recently ran my samples through the nf-core/chipseq pipeline and now want to use ChIPseeker for annotation. However, after checking the output, I couldn’t find the MACS2 folder containing the BED file. I would appreciate any assistance with this issue.

GopishankarThirumoorthy avatar Feb 03 '25 16:02 GopishankarThirumoorthy

Hello. It seems that this pipeline need input sample (control) to call peak. No control not peak.

ljw20180420 avatar Mar 21 '25 11:03 ljw20180420