Funannotate compare "error, is not a funannotate folder and does not seem to be a GenBank file"

[Laura-CE-Campbell]

Hello,

I am have annotated 40 genomes using Funannotate and would like to use Funannotate Compare for some staring analysis.

My code:

funannotate compare -i name_of_file.gbk, name_of_other_file.gbk

etc..

But I keep getting the error " name_of_file.gbk is not a funannotate folder and does not seem to be a GenBank file" I also tried just providing file paths to each Funannotate results directory, but this did not work either.

Any help with this would be greatly appreciated!

Thank you,

Laura

[aldendirks]

Not sure but I think the comma between your file names could be an issue.