How to merge xml files?

Open maruiqi0710 opened this issue 2 years ago • 1 comments

I got lots of InterProScan annotation files with an XML suffix through iprscan5.py (Script from https://www.ebi.ac.uk/seqdb/confluence/display/JDSAT/InterProScan+5+Help+and+Documentation). How to merge them into one file and then pass it to funannotate annotate --iprscan? Is there a specific pipeline?

Apr 05 '23 08:04 maruiqi0710

There isn't a script to do this directly, however, it is done in the interproscan wrapper, you can see the function here:

https://github.com/nextgenusfs/funannotate/blob/master/funannotate/aux_scripts/iprscan-local.py#L52-L64

Apr 11 '23 02:04 nextgenusfs