funannotate
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nextgenusfs
funannotate predict error
hi we are using the latest release
$ funannotate check --show-versions
-------------------------------------------------------
Checking dependencies for 1.8.9
-------------------------------------------------------
You are running Python v 3.7.12. Now checking python packages...
biopython: 1.77
goatools: 1.1.6
matplotlib: 3.4.3
natsort: 8.0.0
numpy: 1.21.4
pandas: 1.3.4
psutil: 5.8.0
requests: 2.26.0
scikit-learn: 1.0.1
scipy: 1.7.0
seaborn: 0.11.2
All 11 python packages installed
You are running Perl v b'5.026002'. Now checking perl modules...
Bio::Perl: 1.7.8
Carp: 1.38
Clone: 0.42
DBD::SQLite: 1.64
DBD::mysql: 4.046
DBI: 1.642
DB_File: 1.855
Data::Dumper: 2.173
File::Basename: 2.85
File::Which: 1.23
Getopt::Long: 2.5
Hash::Merge: 0.300
JSON: 4.02
LWP::UserAgent: 6.39
Logger::Simple: 2.0
POSIX: 1.76
Parallel::ForkManager: 2.02
Pod::Usage: 1.69
Scalar::Util::Numeric: 0.40
Storable: 3.15
Text::Soundex: 3.05
Thread::Queue: 3.12
Tie::File: 1.02
URI::Escape: 3.31
YAML: 1.29
threads: 2.15
threads::shared: 1.56
All 27 Perl modules installed
Checking Environmental Variables...
$FUNANNOTATE_DB=/public/home/liuyuanchao/software/funannotate/database
$PASAHOME=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/opt/pasa-2.4.1
$TRINITY_HOME=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/opt/trinity-2.8.5
$EVM_HOME=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/opt/evidencemodeler-1.1.1
$AUGUSTUS_CONFIG_PATH=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/config/
ERROR: GENEMARK_PATH not set. export GENEMARK_PATH=/path/to/dir
-------------------------------------------------------
Checking external dependencies...
PASA: 2.4.1
CodingQuarry: 2.0
Trinity: 2.8.5
augustus: 3.3.3
bamtools: bamtools 2.5.1
bedtools: bedtools v2.30.0
blat: BLAT v36
diamond: 2.0.13
emapper.py: 2.1.3
ete3: 3.1.2
exonerate: exonerate 2.4.0
fasta: no way to determine
glimmerhmm: 3.0.4
gmap: 2021-08-25
gmes_petap.pl: 4.68_lic
hisat2: 2.2.1
hmmscan: HMMER 3.3.2 (Nov 2020)
hmmsearch: HMMER 3.3.2 (Nov 2020)
java: 11.0.8-internal
kallisto: 0.46.1
mafft: v7.490 (2021/Oct/30)
makeblastdb: makeblastdb 2.2.31+
minimap2: 2.22-r1101
proteinortho: 6.0.31
pslCDnaFilter: no way to determine
salmon: salmon 0.14.1
samtools: samtools 1.9
signalp: 5.0b
snap: 2006-07-28
stringtie: 2.1.7
tRNAscan-SE: 2.0.9 (July 2021)
tantan: tantan 26
tbl2asn: no way to determine, likely 25.X
tblastn: tblastn 2.2.31+
trimal: trimAl v1.4.rev15 build[2013-12-17]
trimmomatic: 0.39
All 36 external dependencies are installed
when we funannotate predict ,errors occurred.
$funannotate predict -i Ganoderma_leucocontextum_I150021_masked.fna --species "Ganoderma leucocontextum" -o ./fun --transcript_evidence ./RNA/RNA.fa --busco_seed_species anidulans --busco_db dikarya --min_training_models 150 --cpus 48 --name GLeITO --cpus 48
-------------------------------------------------------
[Dec 12 12:07 PM]: OS: CentOS Linux 7, 80 cores, ~ 1584 GB RAM. Python: 3.7.12
[Dec 12 12:07 PM]: Running funannotate v1.8.9
[Dec 12 12:07 PM]: Skipping CodingQuarry as no --rna_bam passed
[Dec 12 12:07 PM]: Parsed training data, run ab-initio gene predictors as follows:
Program Training-Method
augustus busco
genemark selftraining
glimmerhmm busco
snap busco
[Dec 12 12:07 PM]: Loading genome assembly and parsing soft-masked repetitive sequences
[Dec 12 12:07 PM]: Genome loaded: 38 scaffolds; 47,738,776 bp; 3.10% repeats masked
[Dec 12 12:07 PM]: Aligning transcript evidence to genome with minimap2
[Dec 12 12:09 PM]: Found 226,657 alignments, wrote GFF3 and Augustus hints to file
[Dec 12 12:09 PM]: Mapping 553,202 proteins to genome using diamond and exonerate
[Dec 12 01:27 PM]: Found 224,955 preliminary alignments --> aligning with exonerate
[Dec 12 01:42 PM]: Exonerate finished: found 219 alignments
[Dec 12 01:46 PM]: Running GeneMark-ES on assembly
[Dec 12 02:03 PM]: 14,513 predictions from GeneMark
[Dec 12 02:03 PM]: Running BUSCO to find conserved gene models for training ab-initio predictors
[Dec 12 02:05 PM]: 416 valid BUSCO predictions found, validating protein sequences
[Dec 12 02:06 PM]: 416 BUSCO predictions validated
[Dec 12 02:06 PM]: Training Augustus using BUSCO gene models
[Dec 12 02:06 PM]: Augustus initial training results:
Feature Specificity Sensitivity
nucleotides 96.6% 91.2%
exons 83.6% 79.9%
genes 54.2% 41.3%
[Dec 12 02:06 PM]: Running Augustus gene prediction using ganoderma_leucocontextum parameters
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=4567632.109576551 --predictionEnd=5034395.320534206 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.10.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 1 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=2740579.265745931 --predictionEnd=3207342.476703586 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.10.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 54 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.5.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 20 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1370289.6328729652 --predictionEnd=1837052.8438306204 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.10.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 58 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1302612.307675302 --predictionEnd=1746816.410233736 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.16.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 16 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1 --predictionEnd=444204.102558434 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.16.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 54 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=434204.102558434 --predictionEnd=878408.205116868 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.16.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 55 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1736816.410233736 --predictionEnd=2181020.51279217 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.16.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 44 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=2605224.615350604 --predictionEnd=3049428.717909038 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.16.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 14 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=2171020.51279217 --predictionEnd=2615224.615350604 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.16.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 32 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1 --predictionEnd=447152.94283859036 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.17.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 37 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=874305.8856771807 --predictionEnd=1321458.828515771 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.17.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 8 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=437152.94283859036 --predictionEnd=884305.8856771807 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.17.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 46 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=2185764.714192952 --predictionEnd=2632917.6570315426 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.17.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 12 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1311458.828515771 --predictionEnd=1758611.7713543614 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.17.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 33 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1748611.7713543614 --predictionEnd=2195764.714192952 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.17.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 46 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1 --predictionEnd=457562.8579752593 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.19.fa
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.18.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 20 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 16 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=2622917.6570315426 --predictionEnd=3070070.599870133 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.17.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 24 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1342688.5739257778 --predictionEnd=1800251.4319010372 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.19.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 10 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=895125.7159505186 --predictionEnd=1352688.5739257778 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.19.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 21 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=447562.8579752593 --predictionEnd=905125.7159505186 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.19.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 46 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1790251.4319010372 --predictionEnd=2247814.2898762967 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.19.fa
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=2685377.147851556 --predictionEnd=3142940.0058268155 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.19.fa
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=2237814.2898762967 --predictionEnd=2695377.147851556 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.19.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 12 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 12 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 22 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=3132940.0058268155 --predictionEnd=3590502.863802075 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.19.fa
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=3580502.863802075 --predictionEnd=4038065.7217773343 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.19.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 21 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 24 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1 --predictionEnd=440729.69340962305 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.20.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 46 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=430729.69340962305 --predictionEnd=871459.3868192461 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.20.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 44 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1292189.080228869 --predictionEnd=1732918.7736384922 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.20.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 45 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=861459.3868192461 --predictionEnd=1302189.080228869 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.20.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 46 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1722918.7736384922 --predictionEnd=2163648.467048115 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.20.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 27 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=2584378.160457738 --predictionEnd=3025107.8538673613 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.20.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 18 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=2153648.467048115 --predictionEnd=2594378.160457738 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.20.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 46 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=342798.63700130227 --predictionEnd=695597.2740026045 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.22.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 6 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1 --predictionEnd=352798.63700130227 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.22.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 39 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.21.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 46 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.23.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 16 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=685597.2740026045 --predictionEnd=1038395.9110039067 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.22.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 14 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1 --predictionEnd=435058.9860720627 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.24.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 30 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1275176.958216188 --predictionEnd=1710235.9442882508 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.24.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 1 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=425058.9860720627 --predictionEnd=860117.9721441254 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.24.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 12 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=850117.9721441254 --predictionEnd=1285176.958216188 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.24.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 33 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=2125294.9303603135 --predictionEnd=2560353.916432376 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.24.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 13 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1700235.9442882508 --predictionEnd=2135294.9303603135 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.24.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 24 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.25.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 46 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.27.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 11 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.28.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 2 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.26.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 33 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=378897.6782262869 --predictionEnd=767795.3564525738 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.29.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 21 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1 --predictionEnd=388897.6782262869 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.29.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 24 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=757795.3564525738 --predictionEnd=1146693.0346788606 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.29.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 46 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1 --predictionEnd=266051.1511946175 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.30.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 1 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=256051.1511946175 --predictionEnd=522102.302389235 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.30.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 13 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1136693.0346788606 --predictionEnd=1525590.7129051476 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.29.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 32 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.31.fa
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.33.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 24 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 9 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.32.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 46 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=413346.7495672537 --predictionEnd=836693.4991345074 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.35.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 4 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1 --predictionEnd=423346.7495672537 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.35.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 14 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.34.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 46 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1240040.248701761 --predictionEnd=1663386.9982690148 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.35.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 17 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=826693.4991345074 --predictionEnd=1250040.248701761 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.35.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 28 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1653386.9982690148 --predictionEnd=2076733.7478362685 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.35.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 46 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1 --predictionEnd=458791.9614030675 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.37.fa
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.36.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 21 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 21 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=448791.9614030675 --predictionEnd=907583.922806135 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.37.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 46 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1346375.8842092026 --predictionEnd=1805167.84561227 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.37.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 21 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=1795167.84561227 --predictionEnd=2253959.8070153375 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.37.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 11 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=897583.922806135 --predictionEnd=1356375.8842092026 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.37.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 35 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=2243959.8070153375 --predictionEnd=2702751.768418405 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.37.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 22 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=3141543.729821473 --predictionEnd=3600335.6912245406 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.37.fa
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=2692751.768418405 --predictionEnd=3151543.729821473 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.37.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 11 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 33 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --predictionStart=3590335.6912245406 --predictionEnd=4049127.6526276083 --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.37.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 15 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
[Dec 12 02:07 PM]: CMD ERROR: augustus --species=ganoderma_leucocontextum --extrinsicCfgFile=/public/home/liuyuanchao/software/anaconda3/envs/funannotate/lib/python3.7/site-packages/funannotate/config/extrinsic.E.XNT.RM.cfg --hintsfile=./fun/predict_misc/hints.ALL.gff --AUGUSTUS_CONFIG_PATH=./fun/predict_misc/ab_initio_parameters/augustus --softmasking=1 --gff3=on --UTR=off --stopCodonExcludedFromCDS=False augustus_tmp_89efc1df-e776-4434-847f-f17d6431ed48/GLeITO.38.fa
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 31 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
Progress: 37.50%
Then the program cannot continue to analyze
Augustus failed, I've not seen this error before
[Dec 12 02:07 PM]: (None, b'OpenBLAS blas_thread_init: pthread_create failed for thread 13 of 80: Resource temporarily unavailable\nOpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 6185974 max\n')
But it seems to suggest that too many processes are open, try running with fewer cpus, ie 24 or something like that.
