Funannotate fix each run give new model genes to must have fixed

[Malokidz]

Are you using the latest release? If you are not using the latest release of funannotate, please upgrade, if bug persists then report here.

Describe the bug A clear and concise description of what the bug is.

What command did you issue? Copy/paste the command used.

Logfiles Please provide relavent log files of the error.

OS/Install Information

• output of funannotate check --show-versions I am annotating a snail genome using funannotate. After updating my annotation a list of model genes must fixed was generated. So I use funannotate fix -i gbk -t fixed_table.tbl but after each fixture the command generate a new list of model genes that must fixed. I almost lost all my predicted model genes this way. What is the problem here ?

[jimie0311]

Hi Team, I have encountered this issue too. any idea?

[Malokidz]

Hi jimie0311 I think you must run the command like this: Funannotate fix -i file.gbk -t file.tbl -d drop_list.txt If you run this command in the working directory you will find the new output in your working directory and if you want to run it again you must use the new generated files not the original ones. I hope you get the idea.

[hyphaltip]

correct you need to fix the .tbl file and run funannotate fix and/or that fix can be to just drop the problematic genes or you can fix the structure and have that updated.