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Run InterProScan with funannotate-docker

Open hanhan124 opened this issue 1 year ago • 1 comments

Are you using the latest release? yes

Describe the bug Running InterProScan5 on 11150 proteins Traceback (most recent call last): File "/venv/lib/python3.8/site-packages/funannotate/aux_scripts/iprscan-local.py", line 82, in checkDocker proc = subprocess.Popen( File "/venv/lib/python3.8/subprocess.py", line 858, in init self._execute_child(args, executable, preexec_fn, close_fds, File "/venv/lib/python3.8/subprocess.py", line 1704, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'docker'

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/venv/lib/python3.8/site-packages/funannotate/aux_scripts/iprscan-local.py", line 337, in checkDocker() File "/venv/lib/python3.8/site-packages/funannotate/aux_scripts/iprscan-local.py", line 89, in checkDocker if e.errno == os.errno.ENOENT: AttributeError: module 'os' has no attribute 'errno'

What command did you issue? funannotate-docker iprscan -i fun_1908-1B -m docker --cpus 12

OS/Install Information funannotate-docker --version funannotate v1.8.17

hanhan124 avatar Apr 29 '24 12:04 hanhan124

Same problem here, any news?

mwittep avatar Jan 09 '25 20:01 mwittep