mesmerize-core

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This extends the function `get_params_diffs` to work when the params are nested under different groups (as caiman now expects) and/or include types that are comparable but not hashable, such as...

ethanbb

`python: command not found error` when calling runfile

1

I don't understand why but I have an issue where the python call in the runfile fails. The make_runfile function creates a runfile like this: ``` #!/bin/bash export CONDA_PREFIX=/home/wanglab/mambaforge/envs/mescore export...

vncntprvst

mcorr fails if input video has less than 1000 frames

1

traceback, this input video had 300 frames: ```python --------------------------------------------------------------------------- BatchItemUnsuccessfulError Traceback (most recent call last) Cell In [24], line 2 1 df = df.caiman.reload_from_disk() ----> 2 df.iloc[-1].mcorr.get_output() File ~/repos/mesmerize-core/mesmerize_core/caiman_extensions/_utils.py:24, in...

kushalkolar

macOS test run fails due to floating point diff

1

I followed the steps at the bottom of the README to install mesmerize and run the tests and got the following errors on my Mac M1. I suspect that these...

rly

playing with pynapple

1

Just playing around with it for now. usage: ```python3 # with a cnmf item df.iloc[1].nap.get_tsd_frame() Out[7]: Time (s) 0 1 2 3 4 5 6 7 8 ... ------------ --------...

kushalkolar

An attempt to make a very simple demo nb for beginners

kushalkolar

We have some weird build issues, see: https://github.com/nel-lab/mesmerize-core/pull/218#issuecomment-1694554277

kushalkolar

added n_processes kwarg to caiman.run()

1

happyqiu

Just another safety check

kushalkolar

`caiman.backup_dataframe()` creates a backup copy of the dataframe Modifier `@_index_parser` so that it doesn't allow `int` indexing, in case the integer indexing has been reset. This will also allow using...

kushalkolar