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Will N have an impact on blast n if RepeatMask uses hard masking and generates N from repeated sequences?

Open helloworldABCD1234 opened this issue 1 year ago • 0 comments

Will N have an impact on blast n if RepeatMask uses hard masking and generates N from repeated sequences? For example, is ATCGGGCTNNTTT the same sequence as ATCGGGCTTTT? Or is it true that ATCGGGCTNNNNTTT and ATCGGGCTTTTT have the same effect in inputting blast n

helloworldABCD1234 avatar Jun 14 '24 10:06 helloworldABCD1234