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[Metagenomics Illumina] explicitly setting humann3 reference db locations in rule

Open AstrobioMike opened this issue 1 year ago • 0 comments

  • an issue can arise if the user is pointing to previously installed humann3 reference databases, or if the locations were manually changed for testing at some point
  • this linked commit on the metagenomics branch integrated always explicitly setting the locations based on what is in the config.yaml: https://github.com/nasa/GeneLab_Data_Processing/commit/1405949bca73e4df378146b0749521b5800e127f
  • changes are in the humann3_PE and humann3_SE rules
  • in case it's helpful, i'm also attaching a modified Snakefile that has the changes in it (as a zip due to file-type restrictions) Snakefile.zip

AstrobioMike avatar Feb 29 '24 01:02 AstrobioMike