GeneLab_Data_Processing
GeneLab_Data_Processing copied to clipboard
[BulkRNASeq] Workflow fails to launch using approach 3 when gldsAccession is not supplied
Expected behavior
Workflow launch using approach 3 (custom runsheet) should not require setting gldsAccession
Actual behaviour
Workflow checks if gldsAccession is unset and raises an error on attempting to start.
Workaround
Supplying gldsAccession as follows:
nextflow run ... --gldsAccession CustomAnalysis
Note: This will output all results to a directory called CustomAnalysis. The name may be changed if an alternative name for the output directory is desired.