Quality of a dataset

[ms609]

Haag et al. measure the ruggedness of a tree landscape by training a regression model (trained on molecular datasets, implemented in C) based on:

• Unique topologies after 100 parsimony searches: 42.9 %
• RF-Distance between parsimony trees: 33.2 %
• Entropy (Average Shannon entropy per column): 17.0 %
• Patterns (unique columns)-over-taxa 13.6 %
• % Gaps 2.5 %
• Bollback 2.3 %
• Sites(n columns)-over-taxa 1.5 %
• % Invariant columns 0.6 %