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Add in functionality for CPAT3

1

Using chatGPT I added code to handle the format of the CPAT3 output file (The cpat_output.ORF_prob.best.tsv)

Question about IUPred2A output handling

2

### Question ### How does IsoformSwitchAnalyzeR know what isoforms the output from IUPred2a is for? ### Context ### I am running IUPred2a on the command line. I'm passing in an...