Martin Pollard
Martin Pollard
@heathsc It also helps if when you create future pull requests you create it on a branch and then tick the box on the pull request allowing allowing maintainers with...
This is an important fix but it needs work. This fix was giving the improvement I wanted but due to a bug it was doing it by doing the opposite...
Have you checked the file descriptors in /proc? Find the pid of the samtools index process with ```ps``` then do: ``` ls -l /proc//fd ``` this will tell you the...
Pull request recreated against minimap branch as requested
I've created a rebased and refreshed version of this branch at https://github.com/mp15/bwa-mem2/tree/simde
Thanks for getting back so quick. That's awesome, any plans to merge it to master or is there a compromise in using the INDEL cluster method? Developing against a special...
Thanks James. I've just been looking at your fixmate_MM branch and I think I might be able to reuse a few of your functions to trim MM tags. Maybe you...
Also are MN tags specified anywhere? I can't find them on hts-spec's samtags?
The deprecation has now expired as of the currently released numpy 1.24 https://github.com/numpy/numpy/pull/22607 and the aliases removed. Thus numpy_indexed is no longer compatible with the current numpy. It would be...
Still running into this issue 7 years later (later version of cluster with same no emails policy). Would you except a pull request to implement one of Josh's fixes?