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sam-xlate bed format /hg38 / gencode

4

Hello, i have tried: ``` java -jar ./ubu-1.2b-SNAPSHOT-jar-with-dependencies.jar sam-xlate \ --bed gencode.v31.annotation.no_head.bed \ --in test.hg38genome.bam \ --out test.hg38genome.bam ``` I am getting following error: ``` Skipping isoform header order determination...

darked89

ubu sam-xlate translate coordinates problem

1

When I used sam-xlate to translate the genome coordinates to transcriptome coordinates, the bam file was much bigger. The genome coordinates bam is about 3gb, while the transcriptome coordinate bam...

guanghaoli