Rcorrector
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mourisl
Error correction for Illumina RNA-seq reads
Hello. I am trying to reproduce the results from this [study here](https://github.com/USDA-FSEPRU/PorcinePBMCs_bulkRNAseq_scRNAseq/blob/main/Analysis_scRNAseq/002_Alignment.md#porcine-immune-single-cell-atlas) and I am getting the following error with no additional information: ```sh /mnt/xxx/rcorrector/jellyfish/bin/jellyfish bc -m 25 -s 100000000...
Hello, I've got a problem with rcorrector not finishing its threads properly and not exiting after performing correction. It seems to be related to the pthreads library, as the problems...
Hello, I have been running Rcorrector and it has given me very good results. But unfortunately, it takes a very long time. Is there any settings which can help increase...
Hi, I am having this issue that was reported in a closed before. I am running Rcorrector in some RNAseq samples (first two by two) and some samples (not all...
Hi! It would be nice to have an option to remove unfixable reads (and their pairs) from the output.
When the example is run there is a warning 'Bad quality threshold is !'. Looking at the code it comes from main.cpp:365: fprintf( stderr, "Bad quality threshold is %c\n", badQualityThreshold...
Li: Enhancement: Accept interleaved reads with `-i` or `--interleaved`. I'd like to do this: ``` seqtk mergepe $HOME/reads/kidney.1.fq.gz $HOME/reads/kidney.2.fq.gz \ | skewer -l 25 -m pe --mean-quality $trim --end-quality $trim...
I would like to share my experience with Rcorrector. I've tested one sample in two conditions: - Corrected with Rcorrector (k 31) - Not corrected Both them were aligned against...
Hi, I am interested in doing genome annotation and I am planning on using mapped RNA-seq data as evidence for gene prediction/annotation. I have worked with genome assembly and I...
