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Terminated following "KeyboardInterrupt"

Open sbresnahan opened this issue 1 year ago • 0 comments

Running with 12 threads following basic usage example in README.md

Traceback (most recent call last):
  File "/rsrch5/home/epi/bhattacharya_lab/software/longreadapps/TranscriptClean_venv/bin/transcriptclean", line 33, in <module>
    sys.exit(load_entry_point('TranscriptClean', 'console_scripts', 'transcriptclean')())
  File "/rsrch5/home/epi/bhattacharya_lab/software/longreadapps/TranscriptClean_venv/TranscriptClean-master/TranscriptClean/TranscriptClean.py", line 37, in main
    header, sam_chroms, sam_chunks = split_SAM(sam_file, n_threads)
  File "/rsrch5/home/epi/bhattacharya_lab/software/longreadapps/TranscriptClean_venv/TranscriptClean-master/TranscriptClean/TranscriptClean.py", line 535, in split_SAM
    chrom = line.split("\t")[2]
KeyboardInterrupt
Terminated

sbresnahan avatar Oct 09 '24 17:10 sbresnahan