generate_report.R have noused argument

[gongjingtang]

Hi dear: I am having an issue with generate_report.R script.I attempt to run TC to correct my pacbio reads. Below are commands: python ~/TC/TranscriptClean.py --threads 30 --sam fruit.sorted.sam --genome final.genome.fasta --spliceJns all_sample.SJ.out.tab --maxLenIndel=50 --maxSJOffset=80000 --outprefix fruit and，I get some files, fruit_clean.fa , fruit_clean.log , fruit_clean.sam , fruit_clean.TE.log

then,i want to use generate_report.R script to visualizing TranscriptClean results,the commands as follow： Rscript ~/TC/generate_report.R ./fruit

but,i get a error like this. Error in read_delim(logFileTE, "\t", escape_double = FALSE, col_names = TRUE, : unused argument (trim_ws = TRUE) Calls: main -> read_delim

if i remove the 'trim_ws = TRUE' in the script,i will get the such result [1] "Reading log files............" [1] "Creating tables.............." [1] "Plot 1.................." [1] "Plot 2.................." [1] "Plot 3.................." [1] "Plot 5.................." [1] "Plot 6.................." null device 1 there no plot 4 ,and the fruit_report.pdf don't have Noncanonical jns counts in pdf.where wrong ？could you response me？ thanks.