Is slow process normal?

[cytang19]

Hi Mitch,

I'm trying to create CAG and it's been running for hours. Is this normal? And if my de novo assembly is using both paired-end reads and single-end read, will it be sufficient to use only interleaved paired-end reads for the read file input? Thanks.

Regards, Cheng

[mjsull]

Hi Cheng,

Yes, unfortunately, can take up to 12 hours. If it takes longer than that let me know.

I am working on an update that will be much quicker.

Best,

Mitchell

On 18 January 2016 at 03:24, tcyee91 [email protected] wrote:

Hi Mitch,

I'm trying to create CAG and it's been running for hours Is this normal? And if my de novo assembly is using both paired-end reads and single-end read, will it be sufficient to use only interleaved paired-end reads for the read file input? Thanks

Regards, Cheng

— Reply to this email directly or view it on GitHub https://github.com/mjsull/Contiguity/issues/22.

[mjsull]

Forgot to answer the second part of that question. It will be fine just to use the paired-end reads.

On 20 January 2016 at 10:19, Mitchell Sullivan [email protected] wrote:

Hi Cheng,

Yes, unfortunately, can take up to 12 hours. If it takes longer than that let me know.

I am working on an update that will be much quicker.

Best,

Mitchell

On 18 January 2016 at 03:24, tcyee91 [email protected] wrote:

Hi Mitch,

I'm trying to create CAG and it's been running for hours Is this normal? And if my de novo assembly is using both paired-end reads and single-end read, will it be sufficient to use only interleaved paired-end reads for the read file input? Thanks

Regards, Cheng

— Reply to this email directly or view it on GitHub https://github.com/mjsull/Contiguity/issues/22.

[cytang19]

I see. Okay. Thanks for the info.